~bzr-pqm/bzr/bzr.dev

4763.2.4 by John Arbash Meinel
merge bzr.2.1 in preparation for NEWS entry.
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# Copyright (C) 2008, 2009, 2010 Canonical Ltd
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is free software; you can redistribute it and/or modify
3641.3.29 by John Arbash Meinel
Cleanup the copyright headers
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
4183.7.1 by Sabin Iacob
update FSF mailing address
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# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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"""B+Tree indices"""
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4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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import cStringIO
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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from bisect import bisect_right
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import math
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import tempfile
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import zlib
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from bzrlib import (
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    chunk_writer,
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    debug,
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    errors,
4208.1.2 by John Arbash Meinel
Switch to using a FIFOCache.
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    fifo_cache,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    index,
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    lru_cache,
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    osutils,
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
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    static_tuple,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
35
    trace,
5273.1.7 by Vincent Ladeuil
No more use of the get_transport imported *symbol*, all uses are through
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    transport,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    )
38
from bzrlib.index import _OPTION_NODE_REFS, _OPTION_KEY_ELEMENTS, _OPTION_LEN
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3641.3.3 by John Arbash Meinel
Change the header to indicate these indexes are
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_BTSIGNATURE = "B+Tree Graph Index 2\n"
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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_OPTION_ROW_LENGTHS = "row_lengths="
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_LEAF_FLAG = "type=leaf\n"
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_INTERNAL_FLAG = "type=internal\n"
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_INTERNAL_OFFSET = "offset="
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_RESERVED_HEADER_BYTES = 120
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_PAGE_SIZE = 4096
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# 4K per page: 4MB - 1000 entries
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_NODE_CACHE_SIZE = 1000
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53
54
class _BuilderRow(object):
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    """The stored state accumulated while writing out a row in the index.
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57
    :ivar spool: A temporary file used to accumulate nodes for this row
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        in the tree.
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    :ivar nodes: The count of nodes emitted so far.
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    """
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    def __init__(self):
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        """Create a _BuilderRow."""
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        self.nodes = 0
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
65
        self.spool = None# tempfile.TemporaryFile(prefix='bzr-index-row-')
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.writer = None
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    def finish_node(self, pad=True):
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        byte_lines, _, padding = self.writer.finish()
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        if self.nodes == 0:
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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            self.spool = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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            # padded note:
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            self.spool.write("\x00" * _RESERVED_HEADER_BYTES)
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
74
        elif self.nodes == 1:
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            # We got bigger than 1 node, switch to a temp file
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            spool = tempfile.TemporaryFile(prefix='bzr-index-row-')
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            spool.write(self.spool.getvalue())
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            self.spool = spool
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        skipped_bytes = 0
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        if not pad and padding:
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            del byte_lines[-1]
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            skipped_bytes = padding
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        self.spool.writelines(byte_lines)
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
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        remainder = (self.spool.tell() + skipped_bytes) % _PAGE_SIZE
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        if remainder != 0:
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            raise AssertionError("incorrect node length: %d, %d"
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                                 % (self.spool.tell(), remainder))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.nodes += 1
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        self.writer = None
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class _InternalBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out internal rows."""
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    def finish_node(self, pad=True):
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        if not pad:
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            raise AssertionError("Must pad internal nodes only.")
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        _BuilderRow.finish_node(self)
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class _LeafBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out a leaf rows."""
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class BTreeBuilder(index.GraphIndexBuilder):
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    """A Builder for B+Tree based Graph indices.
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    The resulting graph has the structure:
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    _SIGNATURE OPTIONS NODES
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    _SIGNATURE     := 'B+Tree Graph Index 1' NEWLINE
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    OPTIONS        := REF_LISTS KEY_ELEMENTS LENGTH
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    REF_LISTS      := 'node_ref_lists=' DIGITS NEWLINE
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    KEY_ELEMENTS   := 'key_elements=' DIGITS NEWLINE
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    LENGTH         := 'len=' DIGITS NEWLINE
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    ROW_LENGTHS    := 'row_lengths' DIGITS (COMMA DIGITS)*
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    NODES          := NODE_COMPRESSED*
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    NODE_COMPRESSED:= COMPRESSED_BYTES{4096}
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    NODE_RAW       := INTERNAL | LEAF
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    INTERNAL       := INTERNAL_FLAG POINTERS
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    LEAF           := LEAF_FLAG ROWS
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    KEY_ELEMENT    := Not-whitespace-utf8
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    KEY            := KEY_ELEMENT (NULL KEY_ELEMENT)*
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    ROWS           := ROW*
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    ROW            := KEY NULL ABSENT? NULL REFERENCES NULL VALUE NEWLINE
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    ABSENT         := 'a'
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    REFERENCES     := REFERENCE_LIST (TAB REFERENCE_LIST){node_ref_lists - 1}
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    REFERENCE_LIST := (REFERENCE (CR REFERENCE)*)?
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    REFERENCE      := KEY
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    VALUE          := no-newline-no-null-bytes
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    """
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    def __init__(self, reference_lists=0, key_elements=1, spill_at=100000):
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        """See GraphIndexBuilder.__init__.
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        :param spill_at: Optional parameter controlling the maximum number
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            of nodes that BTreeBuilder will hold in memory.
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        """
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        index.GraphIndexBuilder.__init__(self, reference_lists=reference_lists,
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            key_elements=key_elements)
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        self._spill_at = spill_at
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        self._backing_indices = []
3644.2.11 by John Arbash Meinel
Document the new form of _nodes and remove an unnecessary cast.
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        # A map of {key: (node_refs, value)}
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        self._nodes = {}
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
145
        # Indicate it hasn't been built yet
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        self._nodes_by_key = None
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
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        self._optimize_for_size = False
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def add_node(self, key, value, references=()):
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        """Add a node to the index.
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        If adding the node causes the builder to reach its spill_at threshold,
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        disk spilling will be triggered.
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        :param key: The key. keys are non-empty tuples containing
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            as many whitespace-free utf8 bytestrings as the key length
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            defined for this index.
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        :param references: An iterable of iterables of keys. Each is a
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            reference to another key.
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        :param value: The value to associate with the key. It may be any
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            bytes as long as it does not contain \0 or \n.
162
        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
163
        # Ensure that 'key' is a StaticTuple
164
        key = static_tuple.StaticTuple.from_sequence(key).intern()
3644.2.9 by John Arbash Meinel
Refactor some code.
165
        # we don't care about absent_references
166
        node_refs, _ = self._check_key_ref_value(key, references, value)
3644.2.2 by John Arbash Meinel
the new btree index doesn't have 'absent' keys in its _nodes
167
        if key in self._nodes:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
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            raise errors.BadIndexDuplicateKey(key, self)
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
169
        self._nodes[key] = static_tuple.StaticTuple(node_refs, value)
3644.2.9 by John Arbash Meinel
Refactor some code.
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        if self._nodes_by_key is not None and self._key_length > 1:
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            self._update_nodes_by_key(key, value, node_refs)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
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        if len(self._nodes) < self._spill_at:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
173
            return
3644.2.9 by John Arbash Meinel
Refactor some code.
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        self._spill_mem_keys_to_disk()
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    def _spill_mem_keys_to_disk(self):
177
        """Write the in memory keys down to disk to cap memory consumption.
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        If we already have some keys written to disk, we will combine them so
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        as to preserve the sorted order.  The algorithm for combining uses
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        powers of two.  So on the first spill, write all mem nodes into a
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        single index. On the second spill, combine the mem nodes with the nodes
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        on disk to create a 2x sized disk index and get rid of the first index.
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        On the third spill, create a single new disk index, which will contain
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        the mem nodes, and preserve the existing 2x sized index.  On the fourth,
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        combine mem with the first and second indexes, creating a new one of
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        size 4x. On the fifth create a single new one, etc.
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        """
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
189
        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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            (new_backing_file, size,
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             backing_pos) = self._spill_mem_keys_and_combine()
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        else:
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            new_backing_file, size = self._spill_mem_keys_without_combining()
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        # Note: The transport here isn't strictly needed, because we will use
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        #       direct access to the new_backing._file object
5273.1.7 by Vincent Ladeuil
No more use of the get_transport imported *symbol*, all uses are through
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        new_backing = BTreeGraphIndex(transport.get_transport('.'),
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                                      '<temp>', size)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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        # GC will clean up the file
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        new_backing._file = new_backing_file
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
200
        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
201
            if len(self._backing_indices) == backing_pos:
202
                self._backing_indices.append(None)
203
            self._backing_indices[backing_pos] = new_backing
204
            for backing_pos in range(backing_pos):
205
                self._backing_indices[backing_pos] = None
206
        else:
207
            self._backing_indices.append(new_backing)
208
        self._nodes = {}
209
        self._nodes_by_key = None
210
211
    def _spill_mem_keys_without_combining(self):
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        return self._write_nodes(self._iter_mem_nodes(), allow_optimize=False)
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    def _spill_mem_keys_and_combine(self):
4168.3.4 by John Arbash Meinel
Restore the ability to spill, but prepare a flag to disable it.
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        iterators_to_combine = [self._iter_mem_nodes()]
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        pos = -1
217
        for pos, backing in enumerate(self._backing_indices):
218
            if backing is None:
219
                pos -= 1
220
                break
221
            iterators_to_combine.append(backing.iter_all_entries())
222
        backing_pos = pos + 1
223
        new_backing_file, size = \
224
            self._write_nodes(self._iter_smallest(iterators_to_combine),
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                              allow_optimize=False)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
226
        return new_backing_file, size, backing_pos
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def add_nodes(self, nodes):
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        """Add nodes to the index.
230
231
        :param nodes: An iterable of (key, node_refs, value) entries to add.
232
        """
233
        if self.reference_lists:
234
            for (key, value, node_refs) in nodes:
235
                self.add_node(key, value, node_refs)
236
        else:
237
            for (key, value) in nodes:
238
                self.add_node(key, value)
239
240
    def _iter_mem_nodes(self):
241
        """Iterate over the nodes held in memory."""
3644.2.8 by John Arbash Meinel
Two quick tweaks.
242
        nodes = self._nodes
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
243
        if self.reference_lists:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
244
            for key in sorted(nodes):
245
                references, value = nodes[key]
246
                yield self, key, value, references
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
247
        else:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
248
            for key in sorted(nodes):
249
                references, value = nodes[key]
250
                yield self, key, value
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
251
252
    def _iter_smallest(self, iterators_to_combine):
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
253
        if len(iterators_to_combine) == 1:
254
            for value in iterators_to_combine[0]:
255
                yield value
256
            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
257
        current_values = []
258
        for iterator in iterators_to_combine:
259
            try:
260
                current_values.append(iterator.next())
261
            except StopIteration:
262
                current_values.append(None)
263
        last = None
264
        while True:
265
            # Decorate candidates with the value to allow 2.4's min to be used.
266
            candidates = [(item[1][1], item) for item
267
                in enumerate(current_values) if item[1] is not None]
268
            if not len(candidates):
269
                return
270
            selected = min(candidates)
271
            # undecorate back to (pos, node)
272
            selected = selected[1]
273
            if last == selected[1][1]:
274
                raise errors.BadIndexDuplicateKey(last, self)
275
            last = selected[1][1]
276
            # Yield, with self as the index
277
            yield (self,) + selected[1][1:]
278
            pos = selected[0]
279
            try:
280
                current_values[pos] = iterators_to_combine[pos].next()
281
            except StopIteration:
282
                current_values[pos] = None
283
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
284
    def _add_key(self, string_key, line, rows, allow_optimize=True):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
285
        """Add a key to the current chunk.
286
287
        :param string_key: The key to add.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
288
        :param line: The fully serialised key and value.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
289
        :param allow_optimize: If set to False, prevent setting the optimize
290
            flag when writing out. This is used by the _spill_mem_keys_to_disk
291
            functionality.
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
292
        """
293
        if rows[-1].writer is None:
294
            # opening a new leaf chunk;
295
            for pos, internal_row in enumerate(rows[:-1]):
296
                # flesh out any internal nodes that are needed to
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
297
                # preserve the height of the tree
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
298
                if internal_row.writer is None:
299
                    length = _PAGE_SIZE
300
                    if internal_row.nodes == 0:
301
                        length -= _RESERVED_HEADER_BYTES # padded
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
302
                    if allow_optimize:
303
                        optimize_for_size = self._optimize_for_size
304
                    else:
305
                        optimize_for_size = False
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
306
                    internal_row.writer = chunk_writer.ChunkWriter(length, 0,
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
307
                        optimize_for_size=optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
308
                    internal_row.writer.write(_INTERNAL_FLAG)
309
                    internal_row.writer.write(_INTERNAL_OFFSET +
310
                        str(rows[pos + 1].nodes) + "\n")
311
            # add a new leaf
312
            length = _PAGE_SIZE
313
            if rows[-1].nodes == 0:
314
                length -= _RESERVED_HEADER_BYTES # padded
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
315
            rows[-1].writer = chunk_writer.ChunkWriter(length,
316
                optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
317
            rows[-1].writer.write(_LEAF_FLAG)
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
318
        if rows[-1].writer.write(line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
319
            # this key did not fit in the node:
320
            rows[-1].finish_node()
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
321
            key_line = string_key + "\n"
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
322
            new_row = True
323
            for row in reversed(rows[:-1]):
324
                # Mark the start of the next node in the node above. If it
4031.3.1 by Frank Aspell
Fixing various typos
325
                # doesn't fit then propagate upwards until we find one that
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
326
                # it does fit into.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
327
                if row.writer.write(key_line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
328
                    row.finish_node()
329
                else:
330
                    # We've found a node that can handle the pointer.
331
                    new_row = False
332
                    break
333
            # If we reached the current root without being able to mark the
334
            # division point, then we need a new root:
335
            if new_row:
336
                # We need a new row
337
                if 'index' in debug.debug_flags:
338
                    trace.mutter('Inserting new global row.')
339
                new_row = _InternalBuilderRow()
340
                reserved_bytes = 0
341
                rows.insert(0, new_row)
342
                # This will be padded, hence the -100
343
                new_row.writer = chunk_writer.ChunkWriter(
344
                    _PAGE_SIZE - _RESERVED_HEADER_BYTES,
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
345
                    reserved_bytes,
346
                    optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
347
                new_row.writer.write(_INTERNAL_FLAG)
348
                new_row.writer.write(_INTERNAL_OFFSET +
349
                    str(rows[1].nodes - 1) + "\n")
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
350
                new_row.writer.write(key_line)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
351
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
352
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
353
    def _write_nodes(self, node_iterator, allow_optimize=True):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
354
        """Write node_iterator out as a B+Tree.
355
356
        :param node_iterator: An iterator of sorted nodes. Each node should
357
            match the output given by iter_all_entries.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
358
        :param allow_optimize: If set to False, prevent setting the optimize
359
            flag when writing out. This is used by the _spill_mem_keys_to_disk
360
            functionality.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
361
        :return: A file handle for a temporary file containing a B+Tree for
362
            the nodes.
363
        """
364
        # The index rows - rows[0] is the root, rows[1] is the layer under it
365
        # etc.
366
        rows = []
367
        # forward sorted by key. In future we may consider topological sorting,
368
        # at the cost of table scans for direct lookup, or a second index for
369
        # direct lookup
370
        key_count = 0
371
        # A stack with the number of nodes of each size. 0 is the root node
372
        # and must always be 1 (if there are any nodes in the tree).
373
        self.row_lengths = []
374
        # Loop over all nodes adding them to the bottom row
375
        # (rows[-1]). When we finish a chunk in a row,
4031.3.1 by Frank Aspell
Fixing various typos
376
        # propagate the key that didn't fit (comes after the chunk) to the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
377
        # row above, transitively.
378
        for node in node_iterator:
379
            if key_count == 0:
380
                # First key triggers the first row
381
                rows.append(_LeafBuilderRow())
382
            key_count += 1
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
383
            string_key, line = _btree_serializer._flatten_node(node,
384
                                    self.reference_lists)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
385
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
386
        for row in reversed(rows):
387
            pad = (type(row) != _LeafBuilderRow)
388
            row.finish_node(pad=pad)
389
        lines = [_BTSIGNATURE]
390
        lines.append(_OPTION_NODE_REFS + str(self.reference_lists) + '\n')
391
        lines.append(_OPTION_KEY_ELEMENTS + str(self._key_length) + '\n')
392
        lines.append(_OPTION_LEN + str(key_count) + '\n')
393
        row_lengths = [row.nodes for row in rows]
394
        lines.append(_OPTION_ROW_LENGTHS + ','.join(map(str, row_lengths)) + '\n')
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
395
        if row_lengths and row_lengths[-1] > 1:
396
            result = tempfile.NamedTemporaryFile(prefix='bzr-index-')
397
        else:
398
            result = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
399
        result.writelines(lines)
400
        position = sum(map(len, lines))
401
        root_row = True
402
        if position > _RESERVED_HEADER_BYTES:
403
            raise AssertionError("Could not fit the header in the"
404
                                 " reserved space: %d > %d"
405
                                 % (position, _RESERVED_HEADER_BYTES))
406
        # write the rows out:
407
        for row in rows:
408
            reserved = _RESERVED_HEADER_BYTES # reserved space for first node
409
            row.spool.flush()
410
            row.spool.seek(0)
411
            # copy nodes to the finalised file.
412
            # Special case the first node as it may be prefixed
413
            node = row.spool.read(_PAGE_SIZE)
414
            result.write(node[reserved:])
4771.3.1 by John Arbash Meinel
We don't have to pad 'short' records.
415
            if len(node) == _PAGE_SIZE:
416
                result.write("\x00" * (reserved - position))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
417
            position = 0 # Only the root row actually has an offset
418
            copied_len = osutils.pumpfile(row.spool, result)
419
            if copied_len != (row.nodes - 1) * _PAGE_SIZE:
420
                if type(row) != _LeafBuilderRow:
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
421
                    raise AssertionError("Incorrect amount of data copied"
422
                        " expected: %d, got: %d"
423
                        % ((row.nodes - 1) * _PAGE_SIZE,
424
                           copied_len))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
425
        result.flush()
426
        size = result.tell()
427
        result.seek(0)
428
        return result, size
429
430
    def finish(self):
431
        """Finalise the index.
432
433
        :return: A file handle for a temporary file containing the nodes added
434
            to the index.
435
        """
436
        return self._write_nodes(self.iter_all_entries())[0]
437
438
    def iter_all_entries(self):
439
        """Iterate over all keys within the index
440
4343.2.2 by John Arbash Meinel
Fix an important doc bug about the api of iter_all_entries()
441
        :return: An iterable of (index, key, value, reference_lists). There is
442
            no defined order for the result iteration - it will be in the most
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
443
            efficient order for the index (in this case dictionary hash order).
444
        """
445
        if 'evil' in debug.debug_flags:
446
            trace.mutter_callsite(3,
447
                "iter_all_entries scales with size of history.")
448
        # Doing serial rather than ordered would be faster; but this shouldn't
449
        # be getting called routinely anyway.
3644.2.8 by John Arbash Meinel
Two quick tweaks.
450
        iterators = [self._iter_mem_nodes()]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
451
        for backing in self._backing_indices:
452
            if backing is not None:
453
                iterators.append(backing.iter_all_entries())
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
454
        if len(iterators) == 1:
455
            return iterators[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
456
        return self._iter_smallest(iterators)
457
458
    def iter_entries(self, keys):
459
        """Iterate over keys within the index.
460
461
        :param keys: An iterable providing the keys to be retrieved.
462
        :return: An iterable of (index, key, value, reference_lists). There is no
463
            defined order for the result iteration - it will be in the most
464
            efficient order for the index (keys iteration order in this case).
465
        """
466
        keys = set(keys)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
467
        # Note: We don't use keys.intersection() here. If you read the C api,
468
        #       set.intersection(other) special cases when other is a set and
469
        #       will iterate the smaller of the two and lookup in the other.
470
        #       It does *not* do this for any other type (even dict, unlike
471
        #       some other set functions.) Since we expect keys is generally <<
472
        #       self._nodes, it is faster to iterate over it in a list
473
        #       comprehension
474
        nodes = self._nodes
475
        local_keys = [key for key in keys if key in nodes]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
476
        if self.reference_lists:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
477
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
478
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
479
                yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
480
        else:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
481
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
482
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
483
                yield self, key, node[1]
3847.2.1 by John Arbash Meinel
Shortcut BTreeBuilder.iter_entries when there are no backing indices.
484
        # Find things that are in backing indices that have not been handled
485
        # yet.
3847.2.3 by John Arbash Meinel
Bring back the shortcut
486
        if not self._backing_indices:
487
            return # We won't find anything there either
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
488
        # Remove all of the keys that we found locally
489
        keys.difference_update(local_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
490
        for backing in self._backing_indices:
491
            if backing is None:
492
                continue
493
            if not keys:
494
                return
495
            for node in backing.iter_entries(keys):
496
                keys.remove(node[1])
497
                yield (self,) + node[1:]
498
499
    def iter_entries_prefix(self, keys):
500
        """Iterate over keys within the index using prefix matching.
501
502
        Prefix matching is applied within the tuple of a key, not to within
503
        the bytestring of each key element. e.g. if you have the keys ('foo',
504
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
505
        only the former key is returned.
506
507
        :param keys: An iterable providing the key prefixes to be retrieved.
508
            Each key prefix takes the form of a tuple the length of a key, but
509
            with the last N elements 'None' rather than a regular bytestring.
510
            The first element cannot be 'None'.
511
        :return: An iterable as per iter_all_entries, but restricted to the
512
            keys with a matching prefix to those supplied. No additional keys
513
            will be returned, and every match that is in the index will be
514
            returned.
515
        """
516
        # XXX: To much duplication with the GraphIndex class; consider finding
517
        # a good place to pull out the actual common logic.
518
        keys = set(keys)
519
        if not keys:
520
            return
521
        for backing in self._backing_indices:
522
            if backing is None:
523
                continue
524
            for node in backing.iter_entries_prefix(keys):
525
                yield (self,) + node[1:]
526
        if self._key_length == 1:
527
            for key in keys:
528
                # sanity check
529
                if key[0] is None:
530
                    raise errors.BadIndexKey(key)
531
                if len(key) != self._key_length:
532
                    raise errors.BadIndexKey(key)
533
                try:
534
                    node = self._nodes[key]
535
                except KeyError:
536
                    continue
537
                if self.reference_lists:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
538
                    yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
539
                else:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
540
                    yield self, key, node[1]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
541
            return
542
        for key in keys:
543
            # sanity check
544
            if key[0] is None:
545
                raise errors.BadIndexKey(key)
546
            if len(key) != self._key_length:
547
                raise errors.BadIndexKey(key)
548
            # find what it refers to:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
549
            key_dict = self._get_nodes_by_key()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
550
            elements = list(key)
551
            # find the subdict to return
552
            try:
553
                while len(elements) and elements[0] is not None:
554
                    key_dict = key_dict[elements[0]]
555
                    elements.pop(0)
556
            except KeyError:
557
                # a non-existant lookup.
558
                continue
559
            if len(elements):
560
                dicts = [key_dict]
561
                while dicts:
562
                    key_dict = dicts.pop(-1)
563
                    # can't be empty or would not exist
564
                    item, value = key_dict.iteritems().next()
565
                    if type(value) == dict:
566
                        # push keys
567
                        dicts.extend(key_dict.itervalues())
568
                    else:
569
                        # yield keys
570
                        for value in key_dict.itervalues():
5088.1.1 by Jelmer Vernooij
Force value to a tuple before concatenating with tuple that contains variables
571
                            yield (self, ) + tuple(value)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
572
            else:
573
                yield (self, ) + key_dict
574
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
575
    def _get_nodes_by_key(self):
576
        if self._nodes_by_key is None:
577
            nodes_by_key = {}
578
            if self.reference_lists:
579
                for key, (references, value) in self._nodes.iteritems():
580
                    key_dict = nodes_by_key
581
                    for subkey in key[:-1]:
582
                        key_dict = key_dict.setdefault(subkey, {})
583
                    key_dict[key[-1]] = key, value, references
584
            else:
585
                for key, (references, value) in self._nodes.iteritems():
586
                    key_dict = nodes_by_key
587
                    for subkey in key[:-1]:
588
                        key_dict = key_dict.setdefault(subkey, {})
589
                    key_dict[key[-1]] = key, value
590
            self._nodes_by_key = nodes_by_key
591
        return self._nodes_by_key
592
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
593
    def key_count(self):
594
        """Return an estimate of the number of keys in this index.
595
596
        For InMemoryGraphIndex the estimate is exact.
597
        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
598
        return len(self._nodes) + sum(backing.key_count() for backing in
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
599
            self._backing_indices if backing is not None)
600
601
    def validate(self):
602
        """In memory index's have no known corruption at the moment."""
603
604
5365.5.12 by John Arbash Meinel
Make _LeafNode inherit from dict (is-a rather than have-a)
605
class _LeafNode(dict):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
606
    """A leaf node for a serialised B+Tree index."""
607
5365.5.23 by John Arbash Meinel
A __sizeof__ check that ensure we are getting what we are looking for.
608
    __slots__ = ('min_key', 'max_key', '_keys')
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
609
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
610
    def __init__(self, bytes, key_length, ref_list_length):
611
        """Parse bytes to create a leaf node object."""
612
        # splitlines mangles the \r delimiters.. don't use it.
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
613
        key_list = _btree_serializer._parse_leaf_lines(bytes,
614
            key_length, ref_list_length)
615
        if key_list:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
616
            self.min_key = key_list[0][0]
617
            self.max_key = key_list[-1][0]
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
618
        else:
619
            self.min_key = self.max_key = None
5365.5.12 by John Arbash Meinel
Make _LeafNode inherit from dict (is-a rather than have-a)
620
        super(_LeafNode, self).__init__(key_list)
5365.5.23 by John Arbash Meinel
A __sizeof__ check that ensure we are getting what we are looking for.
621
        self._keys = dict(self)
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
622
623
    def all_items(self):
624
        """Return a sorted list of (key, (value, refs)) items"""
5365.5.12 by John Arbash Meinel
Make _LeafNode inherit from dict (is-a rather than have-a)
625
        items = self.items()
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
626
        items.sort()
627
        return items
628
629
    def all_keys(self):
630
        """Return a sorted list of all keys."""
5365.5.12 by John Arbash Meinel
Make _LeafNode inherit from dict (is-a rather than have-a)
631
        keys = self.keys()
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
632
        keys.sort()
633
        return keys
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
634
635
636
class _InternalNode(object):
637
    """An internal node for a serialised B+Tree index."""
638
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
639
    __slots__ = ('keys', 'offset')
640
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
641
    def __init__(self, bytes):
642
        """Parse bytes to create an internal node object."""
643
        # splitlines mangles the \r delimiters.. don't use it.
644
        self.keys = self._parse_lines(bytes.split('\n'))
645
646
    def _parse_lines(self, lines):
647
        nodes = []
648
        self.offset = int(lines[1][7:])
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
649
        as_st = static_tuple.StaticTuple.from_sequence
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
650
        for line in lines[2:]:
651
            if line == '':
652
                break
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
653
            nodes.append(as_st(map(intern, line.split('\0'))).intern())
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
654
        return nodes
655
656
657
class BTreeGraphIndex(object):
658
    """Access to nodes via the standard GraphIndex interface for B+Tree's.
659
660
    Individual nodes are held in a LRU cache. This holds the root node in
661
    memory except when very large walks are done.
662
    """
663
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
664
    def __init__(self, transport, name, size, unlimited_cache=False,
665
                 offset=0):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
666
        """Create a B+Tree index object on the index name.
667
668
        :param transport: The transport to read data for the index from.
669
        :param name: The file name of the index on transport.
670
        :param size: Optional size of the index in bytes. This allows
671
            compatibility with the GraphIndex API, as well as ensuring that
672
            the initial read (to read the root node header) can be done
673
            without over-reading even on empty indices, and on small indices
674
            allows single-IO to read the entire index.
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
675
        :param unlimited_cache: If set to True, then instead of using an
676
            LRUCache with size _NODE_CACHE_SIZE, we will use a dict and always
677
            cache all leaf nodes.
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
678
        :param offset: The start of the btree index data isn't byte 0 of the
679
            file. Instead it starts at some point later.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
680
        """
681
        self._transport = transport
682
        self._name = name
683
        self._size = size
684
        self._file = None
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
685
        self._recommended_pages = self._compute_recommended_pages()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
686
        self._root_node = None
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
687
        self._base_offset = offset
5365.5.18 by John Arbash Meinel
Expose the new leaf node factory across the stack.
688
        self._leaf_factory = _LeafNode
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
689
        # Default max size is 100,000 leave values
690
        self._leaf_value_cache = None # lru_cache.LRUCache(100*1000)
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
691
        if unlimited_cache:
692
            self._leaf_node_cache = {}
693
            self._internal_node_cache = {}
694
        else:
695
            self._leaf_node_cache = lru_cache.LRUCache(_NODE_CACHE_SIZE)
696
            # We use a FIFO here just to prevent possible blowout. However, a
697
            # 300k record btree has only 3k leaf nodes, and only 20 internal
698
            # nodes. A value of 100 scales to ~100*100*100 = 1M records.
699
            self._internal_node_cache = fifo_cache.FIFOCache(100)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
700
        self._key_count = None
701
        self._row_lengths = None
702
        self._row_offsets = None # Start of each row, [-1] is the end
703
704
    def __eq__(self, other):
705
        """Equal when self and other were created with the same parameters."""
706
        return (
707
            type(self) == type(other) and
708
            self._transport == other._transport and
709
            self._name == other._name and
710
            self._size == other._size)
711
712
    def __ne__(self, other):
713
        return not self.__eq__(other)
714
3763.8.12 by John Arbash Meinel
Code cleanup.
715
    def _get_and_cache_nodes(self, nodes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
716
        """Read nodes and cache them in the lru.
717
718
        The nodes list supplied is sorted and then read from disk, each node
719
        being inserted it into the _node_cache.
720
721
        Note: Asking for more nodes than the _node_cache can contain will
722
        result in some of the results being immediately discarded, to prevent
723
        this an assertion is raised if more nodes are asked for than are
724
        cachable.
725
726
        :return: A dict of {node_pos: node}
727
        """
728
        found = {}
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
729
        start_of_leaves = None
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
730
        for node_pos, node in self._read_nodes(sorted(nodes)):
731
            if node_pos == 0: # Special case
732
                self._root_node = node
733
            else:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
734
                if start_of_leaves is None:
735
                    start_of_leaves = self._row_offsets[-2]
736
                if node_pos < start_of_leaves:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
737
                    self._internal_node_cache[node_pos] = node
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
738
                else:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
739
                    self._leaf_node_cache[node_pos] = node
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
740
            found[node_pos] = node
741
        return found
742
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
743
    def _compute_recommended_pages(self):
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
744
        """Convert transport's recommended_page_size into btree pages.
745
746
        recommended_page_size is in bytes, we want to know how many _PAGE_SIZE
747
        pages fit in that length.
748
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
749
        recommended_read = self._transport.recommended_page_size()
750
        recommended_pages = int(math.ceil(recommended_read /
751
                                          float(_PAGE_SIZE)))
752
        return recommended_pages
753
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
754
    def _compute_total_pages_in_index(self):
755
        """How many pages are in the index.
756
757
        If we have read the header we will use the value stored there.
758
        Otherwise it will be computed based on the length of the index.
759
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
760
        if self._size is None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
761
            raise AssertionError('_compute_total_pages_in_index should not be'
762
                                 ' called when self._size is None')
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
763
        if self._root_node is not None:
764
            # This is the number of pages as defined by the header
765
            return self._row_offsets[-1]
766
        # This is the number of pages as defined by the size of the index. They
767
        # should be indentical.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
768
        total_pages = int(math.ceil(self._size / float(_PAGE_SIZE)))
769
        return total_pages
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
770
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
771
    def _expand_offsets(self, offsets):
772
        """Find extra pages to download.
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
773
774
        The idea is that we always want to make big-enough requests (like 64kB
775
        for http), so that we don't waste round trips. So given the entries
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
776
        that we already have cached and the new pages being downloaded figure
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
777
        out what other pages we might want to read.
778
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
779
        See also doc/developers/btree_index_prefetch.txt for more details.
780
781
        :param offsets: The offsets to be read
782
        :return: A list of offsets to download
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
783
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
784
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
785
            trace.mutter('expanding: %s\toffsets: %s', self._name, offsets)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
786
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
787
        if len(offsets) >= self._recommended_pages:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
788
            # Don't add more, we are already requesting more than enough
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
789
            if 'index' in debug.debug_flags:
790
                trace.mutter('  not expanding large request (%s >= %s)',
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
791
                             len(offsets), self._recommended_pages)
792
            return offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
793
        if self._size is None:
794
            # Don't try anything, because we don't know where the file ends
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
795
            if 'index' in debug.debug_flags:
796
                trace.mutter('  not expanding without knowing index size')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
797
            return offsets
798
        total_pages = self._compute_total_pages_in_index()
799
        cached_offsets = self._get_offsets_to_cached_pages()
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
800
        # If reading recommended_pages would read the rest of the index, just
801
        # do so.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
802
        if total_pages - len(cached_offsets) <= self._recommended_pages:
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
803
            # Read whatever is left
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
804
            if cached_offsets:
805
                expanded = [x for x in xrange(total_pages)
806
                               if x not in cached_offsets]
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
807
            else:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
808
                expanded = range(total_pages)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
809
            if 'index' in debug.debug_flags:
810
                trace.mutter('  reading all unread pages: %s', expanded)
811
            return expanded
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
812
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
813
        if self._root_node is None:
814
            # ATM on the first read of the root node of a large index, we don't
815
            # bother pre-reading any other pages. This is because the
816
            # likelyhood of actually reading interesting pages is very low.
817
            # See doc/developers/btree_index_prefetch.txt for a discussion, and
818
            # a possible implementation when we are guessing that the second
819
            # layer index is small
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
820
            final_offsets = offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
821
        else:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
822
            tree_depth = len(self._row_lengths)
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
823
            if len(cached_offsets) < tree_depth and len(offsets) == 1:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
824
                # We haven't read enough to justify expansion
825
                # If we are only going to read the root node, and 1 leaf node,
826
                # then it isn't worth expanding our request. Once we've read at
827
                # least 2 nodes, then we are probably doing a search, and we
828
                # start expanding our requests.
829
                if 'index' in debug.debug_flags:
830
                    trace.mutter('  not expanding on first reads')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
831
                return offsets
832
            final_offsets = self._expand_to_neighbors(offsets, cached_offsets,
833
                                                      total_pages)
834
835
        final_offsets = sorted(final_offsets)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
836
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
837
            trace.mutter('expanded:  %s', final_offsets)
838
        return final_offsets
839
840
    def _expand_to_neighbors(self, offsets, cached_offsets, total_pages):
841
        """Expand requests to neighbors until we have enough pages.
842
843
        This is called from _expand_offsets after policy has determined that we
844
        want to expand.
845
        We only want to expand requests within a given layer. We cheat a little
846
        bit and assume all requests will be in the same layer. This is true
847
        given the current design, but if it changes this algorithm may perform
848
        oddly.
849
850
        :param offsets: requested offsets
851
        :param cached_offsets: offsets for pages we currently have cached
852
        :return: A set() of offsets after expansion
853
        """
854
        final_offsets = set(offsets)
855
        first = end = None
856
        new_tips = set(final_offsets)
857
        while len(final_offsets) < self._recommended_pages and new_tips:
858
            next_tips = set()
859
            for pos in new_tips:
860
                if first is None:
861
                    first, end = self._find_layer_first_and_end(pos)
862
                previous = pos - 1
863
                if (previous > 0
864
                    and previous not in cached_offsets
865
                    and previous not in final_offsets
866
                    and previous >= first):
867
                    next_tips.add(previous)
868
                after = pos + 1
869
                if (after < total_pages
870
                    and after not in cached_offsets
871
                    and after not in final_offsets
872
                    and after < end):
873
                    next_tips.add(after)
874
                # This would keep us from going bigger than
875
                # recommended_pages by only expanding the first offsets.
876
                # However, if we are making a 'wide' request, it is
877
                # reasonable to expand all points equally.
878
                # if len(final_offsets) > recommended_pages:
879
                #     break
880
            final_offsets.update(next_tips)
881
            new_tips = next_tips
882
        return final_offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
883
4744.2.6 by John Arbash Meinel
Start exposing an GraphIndex.clear_cache() member.
884
    def clear_cache(self):
885
        """Clear out any cached/memoized values.
886
887
        This can be called at any time, but generally it is used when we have
888
        extracted some information, but don't expect to be requesting any more
889
        from this index.
890
        """
891
        # Note that we don't touch self._root_node or self._internal_node_cache
892
        # We don't expect either of those to be big, and it can save
893
        # round-trips in the future. We may re-evaluate this if InternalNode
894
        # memory starts to be an issue.
895
        self._leaf_node_cache.clear()
896
4011.5.3 by Andrew Bennetts
Implement and test external_references on GraphIndex and BTreeGraphIndex.
897
    def external_references(self, ref_list_num):
898
        if self._root_node is None:
899
            self._get_root_node()
900
        if ref_list_num + 1 > self.node_ref_lists:
901
            raise ValueError('No ref list %d, index has %d ref lists'
902
                % (ref_list_num, self.node_ref_lists))
903
        keys = set()
904
        refs = set()
905
        for node in self.iter_all_entries():
906
            keys.add(node[1])
907
            refs.update(node[3][ref_list_num])
908
        return refs - keys
909
3763.8.12 by John Arbash Meinel
Code cleanup.
910
    def _find_layer_first_and_end(self, offset):
911
        """Find the start/stop nodes for the layer corresponding to offset.
912
913
        :return: (first, end)
914
            first is the first node in this layer
915
            end is the first node of the next layer
916
        """
917
        first = end = 0
918
        for roffset in self._row_offsets:
919
            first = end
920
            end = roffset
921
            if offset < roffset:
922
                break
923
        return first, end
924
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
925
    def _get_offsets_to_cached_pages(self):
3763.8.12 by John Arbash Meinel
Code cleanup.
926
        """Determine what nodes we already have cached."""
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
927
        cached_offsets = set(self._internal_node_cache.keys())
928
        cached_offsets.update(self._leaf_node_cache.keys())
3763.8.12 by John Arbash Meinel
Code cleanup.
929
        if self._root_node is not None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
930
            cached_offsets.add(0)
931
        return cached_offsets
3763.8.12 by John Arbash Meinel
Code cleanup.
932
933
    def _get_root_node(self):
934
        if self._root_node is None:
935
            # We may not have a root node yet
936
            self._get_internal_nodes([0])
937
        return self._root_node
938
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
939
    def _get_nodes(self, cache, node_indexes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
940
        found = {}
941
        needed = []
942
        for idx in node_indexes:
943
            if idx == 0 and self._root_node is not None:
944
                found[0] = self._root_node
945
                continue
946
            try:
947
                found[idx] = cache[idx]
948
            except KeyError:
949
                needed.append(idx)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
950
        if not needed:
951
            return found
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
952
        needed = self._expand_offsets(needed)
3763.8.12 by John Arbash Meinel
Code cleanup.
953
        found.update(self._get_and_cache_nodes(needed))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
954
        return found
955
956
    def _get_internal_nodes(self, node_indexes):
957
        """Get a node, from cache or disk.
958
959
        After getting it, the node will be cached.
960
        """
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
961
        return self._get_nodes(self._internal_node_cache, node_indexes)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
962
3805.4.6 by John Arbash Meinel
refactor for clarity.
963
    def _cache_leaf_values(self, nodes):
964
        """Cache directly from key => value, skipping the btree."""
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
965
        if self._leaf_value_cache is not None:
3805.4.6 by John Arbash Meinel
refactor for clarity.
966
            for node in nodes.itervalues():
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
967
                for key, value in node.all_items():
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
968
                    if key in self._leaf_value_cache:
969
                        # Don't add the rest of the keys, we've seen this node
970
                        # before.
971
                        break
972
                    self._leaf_value_cache[key] = value
3805.4.6 by John Arbash Meinel
refactor for clarity.
973
974
    def _get_leaf_nodes(self, node_indexes):
975
        """Get a bunch of nodes, from cache or disk."""
976
        found = self._get_nodes(self._leaf_node_cache, node_indexes)
977
        self._cache_leaf_values(found)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
978
        return found
979
980
    def iter_all_entries(self):
981
        """Iterate over all keys within the index.
982
983
        :return: An iterable of (index, key, value) or (index, key, value, reference_lists).
984
            The former tuple is used when there are no reference lists in the
985
            index, making the API compatible with simple key:value index types.
986
            There is no defined order for the result iteration - it will be in
987
            the most efficient order for the index.
988
        """
989
        if 'evil' in debug.debug_flags:
990
            trace.mutter_callsite(3,
991
                "iter_all_entries scales with size of history.")
992
        if not self.key_count():
993
            return
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
994
        if self._row_offsets[-1] == 1:
995
            # There is only the root node, and we read that via key_count()
996
            if self.node_ref_lists:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
997
                for key, (value, refs) in self._root_node.all_items():
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
998
                    yield (self, key, value, refs)
999
            else:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1000
                for key, (value, refs) in self._root_node.all_items():
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1001
                    yield (self, key, value)
1002
            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1003
        start_of_leaves = self._row_offsets[-2]
1004
        end_of_leaves = self._row_offsets[-1]
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1005
        needed_offsets = range(start_of_leaves, end_of_leaves)
1006
        if needed_offsets == [0]:
1007
            # Special case when we only have a root node, as we have already
1008
            # read everything
1009
            nodes = [(0, self._root_node)]
1010
        else:
1011
            nodes = self._read_nodes(needed_offsets)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1012
        # We iterate strictly in-order so that we can use this function
1013
        # for spilling index builds to disk.
1014
        if self.node_ref_lists:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1015
            for _, node in nodes:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1016
                for key, (value, refs) in node.all_items():
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1017
                    yield (self, key, value, refs)
1018
        else:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1019
            for _, node in nodes:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1020
                for key, (value, refs) in node.all_items():
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1021
                    yield (self, key, value)
1022
1023
    @staticmethod
1024
    def _multi_bisect_right(in_keys, fixed_keys):
1025
        """Find the positions where each 'in_key' would fit in fixed_keys.
1026
1027
        This is equivalent to doing "bisect_right" on each in_key into
1028
        fixed_keys
1029
1030
        :param in_keys: A sorted list of keys to match with fixed_keys
1031
        :param fixed_keys: A sorted list of keys to match against
1032
        :return: A list of (integer position, [key list]) tuples.
1033
        """
1034
        if not in_keys:
1035
            return []
1036
        if not fixed_keys:
1037
            # no pointers in the fixed_keys list, which means everything must
1038
            # fall to the left.
1039
            return [(0, in_keys)]
1040
1041
        # TODO: Iterating both lists will generally take M + N steps
1042
        #       Bisecting each key will generally take M * log2 N steps.
1043
        #       If we had an efficient way to compare, we could pick the method
1044
        #       based on which has the fewer number of steps.
1045
        #       There is also the argument that bisect_right is a compiled
1046
        #       function, so there is even more to be gained.
1047
        # iter_steps = len(in_keys) + len(fixed_keys)
1048
        # bisect_steps = len(in_keys) * math.log(len(fixed_keys), 2)
1049
        if len(in_keys) == 1: # Bisect will always be faster for M = 1
1050
            return [(bisect_right(fixed_keys, in_keys[0]), in_keys)]
1051
        # elif bisect_steps < iter_steps:
1052
        #     offsets = {}
1053
        #     for key in in_keys:
1054
        #         offsets.setdefault(bisect_right(fixed_keys, key),
1055
        #                            []).append(key)
1056
        #     return [(o, offsets[o]) for o in sorted(offsets)]
1057
        in_keys_iter = iter(in_keys)
1058
        fixed_keys_iter = enumerate(fixed_keys)
1059
        cur_in_key = in_keys_iter.next()
1060
        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1061
1062
        class InputDone(Exception): pass
1063
        class FixedDone(Exception): pass
1064
1065
        output = []
1066
        cur_out = []
1067
1068
        # TODO: Another possibility is that rather than iterating on each side,
1069
        #       we could use a combination of bisecting and iterating. For
1070
        #       example, while cur_in_key < fixed_key, bisect to find its
1071
        #       point, then iterate all matching keys, then bisect (restricted
1072
        #       to only the remainder) for the next one, etc.
1073
        try:
1074
            while True:
1075
                if cur_in_key < cur_fixed_key:
1076
                    cur_keys = []
1077
                    cur_out = (cur_fixed_offset, cur_keys)
1078
                    output.append(cur_out)
1079
                    while cur_in_key < cur_fixed_key:
1080
                        cur_keys.append(cur_in_key)
1081
                        try:
1082
                            cur_in_key = in_keys_iter.next()
1083
                        except StopIteration:
1084
                            raise InputDone
1085
                    # At this point cur_in_key must be >= cur_fixed_key
1086
                # step the cur_fixed_key until we pass the cur key, or walk off
1087
                # the end
1088
                while cur_in_key >= cur_fixed_key:
1089
                    try:
1090
                        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1091
                    except StopIteration:
1092
                        raise FixedDone
1093
        except InputDone:
1094
            # We consumed all of the input, nothing more to do
1095
            pass
1096
        except FixedDone:
1097
            # There was some input left, but we consumed all of fixed, so we
1098
            # have to add one more for the tail
1099
            cur_keys = [cur_in_key]
1100
            cur_keys.extend(in_keys_iter)
1101
            cur_out = (len(fixed_keys), cur_keys)
1102
            output.append(cur_out)
1103
        return output
1104
4593.4.5 by John Arbash Meinel
Start adding some tests.
1105
    def _walk_through_internal_nodes(self, keys):
1106
        """Take the given set of keys, and find the corresponding LeafNodes.
1107
1108
        :param keys: An unsorted iterable of keys to search for
1109
        :return: (nodes, index_and_keys)
1110
            nodes is a dict mapping {index: LeafNode}
1111
            keys_at_index is a list of tuples of [(index, [keys for Leaf])]
1112
        """
1113
        # 6 seconds spent in miss_torture using the sorted() line.
1114
        # Even with out of order disk IO it seems faster not to sort it when
1115
        # large queries are being made.
1116
        keys_at_index = [(0, sorted(keys))]
1117
1118
        for row_pos, next_row_start in enumerate(self._row_offsets[1:-1]):
1119
            node_indexes = [idx for idx, s_keys in keys_at_index]
1120
            nodes = self._get_internal_nodes(node_indexes)
1121
1122
            next_nodes_and_keys = []
1123
            for node_index, sub_keys in keys_at_index:
1124
                node = nodes[node_index]
1125
                positions = self._multi_bisect_right(sub_keys, node.keys)
1126
                node_offset = next_row_start + node.offset
1127
                next_nodes_and_keys.extend([(node_offset + pos, s_keys)
1128
                                           for pos, s_keys in positions])
1129
            keys_at_index = next_nodes_and_keys
1130
        # We should now be at the _LeafNodes
1131
        node_indexes = [idx for idx, s_keys in keys_at_index]
1132
1133
        # TODO: We may *not* want to always read all the nodes in one
1134
        #       big go. Consider setting a max size on this.
1135
        nodes = self._get_leaf_nodes(node_indexes)
1136
        return nodes, keys_at_index
1137
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1138
    def iter_entries(self, keys):
1139
        """Iterate over keys within the index.
1140
1141
        :param keys: An iterable providing the keys to be retrieved.
1142
        :return: An iterable as per iter_all_entries, but restricted to the
1143
            keys supplied. No additional keys will be returned, and every
1144
            key supplied that is in the index will be returned.
1145
        """
1146
        # 6 seconds spent in miss_torture using the sorted() line.
1147
        # Even with out of order disk IO it seems faster not to sort it when
1148
        # large queries are being made.
1149
        # However, now that we are doing multi-way bisecting, we need the keys
1150
        # in sorted order anyway. We could change the multi-way code to not
1151
        # require sorted order. (For example, it bisects for the first node,
1152
        # does an in-order search until a key comes before the current point,
1153
        # which it then bisects for, etc.)
1154
        keys = frozenset(keys)
1155
        if not keys:
1156
            return
1157
1158
        if not self.key_count():
1159
            return
1160
1161
        needed_keys = []
1162
        if self._leaf_value_cache is None:
1163
            needed_keys = keys
1164
        else:
1165
            for key in keys:
1166
                value = self._leaf_value_cache.get(key, None)
1167
                if value is not None:
1168
                    # This key is known not to be here, skip it
1169
                    value, refs = value
1170
                    if self.node_ref_lists:
1171
                        yield (self, key, value, refs)
1172
                    else:
1173
                        yield (self, key, value)
1174
                else:
1175
                    needed_keys.append(key)
1176
1177
        last_key = None
1178
        needed_keys = keys
1179
        if not needed_keys:
1180
            return
4593.4.5 by John Arbash Meinel
Start adding some tests.
1181
        nodes, nodes_and_keys = self._walk_through_internal_nodes(needed_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1182
        for node_index, sub_keys in nodes_and_keys:
1183
            if not sub_keys:
1184
                continue
1185
            node = nodes[node_index]
1186
            for next_sub_key in sub_keys:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1187
                if next_sub_key in node:
1188
                    value, refs = node[next_sub_key]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1189
                    if self.node_ref_lists:
1190
                        yield (self, next_sub_key, value, refs)
1191
                    else:
1192
                        yield (self, next_sub_key, value)
1193
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1194
    def _find_ancestors(self, keys, ref_list_num, parent_map, missing_keys):
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1195
        """Find the parent_map information for the set of keys.
1196
1197
        This populates the parent_map dict and missing_keys set based on the
1198
        queried keys. It also can fill out an arbitrary number of parents that
1199
        it finds while searching for the supplied keys.
1200
1201
        It is unlikely that you want to call this directly. See
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1202
        "CombinedGraphIndex.find_ancestry()" for a more appropriate API.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1203
1204
        :param keys: A keys whose ancestry we want to return
1205
            Every key will either end up in 'parent_map' or 'missing_keys'.
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1206
        :param ref_list_num: This index in the ref_lists is the parents we
1207
            care about.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1208
        :param parent_map: {key: parent_keys} for keys that are present in this
1209
            index. This may contain more entries than were in 'keys', that are
1210
            reachable ancestors of the keys requested.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1211
        :param missing_keys: keys which are known to be missing in this index.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1212
            This may include parents that were not directly requested, but we
1213
            were able to determine that they are not present in this index.
1214
        :return: search_keys    parents that were found but not queried to know
1215
            if they are missing or present. Callers can re-query this index for
1216
            those keys, and they will be placed into parent_map or missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1217
        """
1218
        if not self.key_count():
1219
            # We use key_count() to trigger reading the root node and
1220
            # determining info about this BTreeGraphIndex
1221
            # If we don't have any keys, then everything is missing
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1222
            missing_keys.update(keys)
1223
            return set()
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1224
        if ref_list_num >= self.node_ref_lists:
1225
            raise ValueError('No ref list %d, index has %d ref lists'
1226
                % (ref_list_num, self.node_ref_lists))
1227
1228
        # The main trick we are trying to accomplish is that when we find a
1229
        # key listing its parents, we expect that the parent key is also likely
1230
        # to sit on the same page. Allowing us to expand parents quickly
1231
        # without suffering the full stack of bisecting, etc.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1232
        nodes, nodes_and_keys = self._walk_through_internal_nodes(keys)
1233
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1234
        # These are parent keys which could not be immediately resolved on the
1235
        # page where the child was present. Note that we may already be
1236
        # searching for that key, and it may actually be present [or known
1237
        # missing] on one of the other pages we are reading.
1238
        # TODO:
1239
        #   We could try searching for them in the immediate previous or next
1240
        #   page. If they occur "later" we could put them in a pending lookup
1241
        #   set, and then for each node we read thereafter we could check to
1242
        #   see if they are present.
1243
        #   However, we don't know the impact of keeping this list of things
1244
        #   that I'm going to search for every node I come across from here on
1245
        #   out.
1246
        #   It doesn't handle the case when the parent key is missing on a
1247
        #   page that we *don't* read. So we already have to handle being
1248
        #   re-entrant for that.
1249
        #   Since most keys contain a date string, they are more likely to be
1250
        #   found earlier in the file than later, but we would know that right
1251
        #   away (key < min_key), and wouldn't keep searching it on every other
1252
        #   page that we read.
1253
        #   Mostly, it is an idea, one which should be benchmarked.
1254
        parents_not_on_page = set()
1255
1256
        for node_index, sub_keys in nodes_and_keys:
1257
            if not sub_keys:
1258
                continue
1259
            # sub_keys is all of the keys we are looking for that should exist
1260
            # on this page, if they aren't here, then they won't be found
1261
            node = nodes[node_index]
1262
            parents_to_check = set()
1263
            for next_sub_key in sub_keys:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1264
                if next_sub_key not in node:
4593.4.5 by John Arbash Meinel
Start adding some tests.
1265
                    # This one is just not present in the index at all
1266
                    missing_keys.add(next_sub_key)
1267
                else:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1268
                    value, refs = node[next_sub_key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1269
                    parent_keys = refs[ref_list_num]
1270
                    parent_map[next_sub_key] = parent_keys
1271
                    parents_to_check.update(parent_keys)
1272
            # Don't look for things we've already found
1273
            parents_to_check = parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1274
            # this can be used to test the benefit of having the check loop
1275
            # inlined.
1276
            # parents_not_on_page.update(parents_to_check)
1277
            # continue
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1278
            while parents_to_check:
1279
                next_parents_to_check = set()
1280
                for key in parents_to_check:
5365.5.1 by John Arbash Meinel
Implement a custom parser for chk btree leaves.
1281
                    if key in node:
1282
                        value, refs = node[key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1283
                        parent_keys = refs[ref_list_num]
1284
                        parent_map[key] = parent_keys
1285
                        next_parents_to_check.update(parent_keys)
1286
                    else:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1287
                        # This parent either is genuinely missing, or should be
1288
                        # found on another page. Perf test whether it is better
1289
                        # to check if this node should fit on this page or not.
1290
                        # in the 'everything-in-one-pack' scenario, this *not*
1291
                        # doing the check is 237ms vs 243ms.
1292
                        # So slightly better, but I assume the standard 'lots
1293
                        # of packs' is going to show a reasonable improvement
1294
                        # from the check, because it avoids 'going around
1295
                        # again' for everything that is in another index
4593.4.5 by John Arbash Meinel
Start adding some tests.
1296
                        # parents_not_on_page.add(key)
1297
                        # Missing for some reason
1298
                        if key < node.min_key:
1299
                            # in the case of bzr.dev, 3.4k/5.3k misses are
1300
                            # 'earlier' misses (65%)
1301
                            parents_not_on_page.add(key)
1302
                        elif key > node.max_key:
1303
                            # This parent key would be present on a different
1304
                            # LeafNode
1305
                            parents_not_on_page.add(key)
1306
                        else:
1307
                            # assert key != node.min_key and key != node.max_key
1308
                            # If it was going to be present, it would be on
1309
                            # *this* page, so mark it missing.
1310
                            missing_keys.add(key)
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1311
                parents_to_check = next_parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1312
                # Might want to do another .difference() from missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1313
        # parents_not_on_page could have been found on a different page, or be
1314
        # known to be missing. So cull out everything that has already been
1315
        # found.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1316
        search_keys = parents_not_on_page.difference(
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1317
            parent_map).difference(missing_keys)
4593.4.5 by John Arbash Meinel
Start adding some tests.
1318
        return search_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1319
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1320
    def iter_entries_prefix(self, keys):
1321
        """Iterate over keys within the index using prefix matching.
1322
1323
        Prefix matching is applied within the tuple of a key, not to within
1324
        the bytestring of each key element. e.g. if you have the keys ('foo',
1325
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1326
        only the former key is returned.
1327
1328
        WARNING: Note that this method currently causes a full index parse
1329
        unconditionally (which is reasonably appropriate as it is a means for
1330
        thunking many small indices into one larger one and still supplies
1331
        iter_all_entries at the thunk layer).
1332
1333
        :param keys: An iterable providing the key prefixes to be retrieved.
1334
            Each key prefix takes the form of a tuple the length of a key, but
1335
            with the last N elements 'None' rather than a regular bytestring.
1336
            The first element cannot be 'None'.
1337
        :return: An iterable as per iter_all_entries, but restricted to the
1338
            keys with a matching prefix to those supplied. No additional keys
1339
            will be returned, and every match that is in the index will be
1340
            returned.
1341
        """
1342
        keys = sorted(set(keys))
1343
        if not keys:
1344
            return
1345
        # Load if needed to check key lengths
1346
        if self._key_count is None:
1347
            self._get_root_node()
1348
        # TODO: only access nodes that can satisfy the prefixes we are looking
1349
        # for. For now, to meet API usage (as this function is not used by
1350
        # current bzrlib) just suck the entire index and iterate in memory.
1351
        nodes = {}
1352
        if self.node_ref_lists:
1353
            if self._key_length == 1:
1354
                for _1, key, value, refs in self.iter_all_entries():
1355
                    nodes[key] = value, refs
1356
            else:
1357
                nodes_by_key = {}
1358
                for _1, key, value, refs in self.iter_all_entries():
1359
                    key_value = key, value, refs
1360
                    # For a key of (foo, bar, baz) create
1361
                    # _nodes_by_key[foo][bar][baz] = key_value
1362
                    key_dict = nodes_by_key
1363
                    for subkey in key[:-1]:
1364
                        key_dict = key_dict.setdefault(subkey, {})
1365
                    key_dict[key[-1]] = key_value
1366
        else:
1367
            if self._key_length == 1:
1368
                for _1, key, value in self.iter_all_entries():
1369
                    nodes[key] = value
1370
            else:
1371
                nodes_by_key = {}
1372
                for _1, key, value in self.iter_all_entries():
1373
                    key_value = key, value
1374
                    # For a key of (foo, bar, baz) create
1375
                    # _nodes_by_key[foo][bar][baz] = key_value
1376
                    key_dict = nodes_by_key
1377
                    for subkey in key[:-1]:
1378
                        key_dict = key_dict.setdefault(subkey, {})
1379
                    key_dict[key[-1]] = key_value
1380
        if self._key_length == 1:
1381
            for key in keys:
1382
                # sanity check
1383
                if key[0] is None:
1384
                    raise errors.BadIndexKey(key)
1385
                if len(key) != self._key_length:
1386
                    raise errors.BadIndexKey(key)
1387
                try:
1388
                    if self.node_ref_lists:
1389
                        value, node_refs = nodes[key]
1390
                        yield self, key, value, node_refs
1391
                    else:
1392
                        yield self, key, nodes[key]
1393
                except KeyError:
1394
                    pass
1395
            return
1396
        for key in keys:
1397
            # sanity check
1398
            if key[0] is None:
1399
                raise errors.BadIndexKey(key)
1400
            if len(key) != self._key_length:
1401
                raise errors.BadIndexKey(key)
1402
            # find what it refers to:
1403
            key_dict = nodes_by_key
1404
            elements = list(key)
1405
            # find the subdict whose contents should be returned.
1406
            try:
1407
                while len(elements) and elements[0] is not None:
1408
                    key_dict = key_dict[elements[0]]
1409
                    elements.pop(0)
1410
            except KeyError:
1411
                # a non-existant lookup.
1412
                continue
1413
            if len(elements):
1414
                dicts = [key_dict]
1415
                while dicts:
1416
                    key_dict = dicts.pop(-1)
1417
                    # can't be empty or would not exist
1418
                    item, value = key_dict.iteritems().next()
1419
                    if type(value) == dict:
1420
                        # push keys
1421
                        dicts.extend(key_dict.itervalues())
1422
                    else:
1423
                        # yield keys
1424
                        for value in key_dict.itervalues():
1425
                            # each value is the key:value:node refs tuple
1426
                            # ready to yield.
1427
                            yield (self, ) + value
1428
            else:
1429
                # the last thing looked up was a terminal element
1430
                yield (self, ) + key_dict
1431
1432
    def key_count(self):
1433
        """Return an estimate of the number of keys in this index.
1434
1435
        For BTreeGraphIndex the estimate is exact as it is contained in the
1436
        header.
1437
        """
1438
        if self._key_count is None:
1439
            self._get_root_node()
1440
        return self._key_count
1441
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1442
    def _compute_row_offsets(self):
1443
        """Fill out the _row_offsets attribute based on _row_lengths."""
1444
        offsets = []
1445
        row_offset = 0
1446
        for row in self._row_lengths:
1447
            offsets.append(row_offset)
1448
            row_offset += row
1449
        offsets.append(row_offset)
1450
        self._row_offsets = offsets
1451
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1452
    def _parse_header_from_bytes(self, bytes):
1453
        """Parse the header from a region of bytes.
1454
1455
        :param bytes: The data to parse.
1456
        :return: An offset, data tuple such as readv yields, for the unparsed
1457
            data. (which may be of length 0).
1458
        """
1459
        signature = bytes[0:len(self._signature())]
1460
        if not signature == self._signature():
1461
            raise errors.BadIndexFormatSignature(self._name, BTreeGraphIndex)
1462
        lines = bytes[len(self._signature()):].splitlines()
1463
        options_line = lines[0]
1464
        if not options_line.startswith(_OPTION_NODE_REFS):
1465
            raise errors.BadIndexOptions(self)
1466
        try:
1467
            self.node_ref_lists = int(options_line[len(_OPTION_NODE_REFS):])
1468
        except ValueError:
1469
            raise errors.BadIndexOptions(self)
1470
        options_line = lines[1]
1471
        if not options_line.startswith(_OPTION_KEY_ELEMENTS):
1472
            raise errors.BadIndexOptions(self)
1473
        try:
1474
            self._key_length = int(options_line[len(_OPTION_KEY_ELEMENTS):])
1475
        except ValueError:
1476
            raise errors.BadIndexOptions(self)
1477
        options_line = lines[2]
1478
        if not options_line.startswith(_OPTION_LEN):
1479
            raise errors.BadIndexOptions(self)
1480
        try:
1481
            self._key_count = int(options_line[len(_OPTION_LEN):])
1482
        except ValueError:
1483
            raise errors.BadIndexOptions(self)
1484
        options_line = lines[3]
1485
        if not options_line.startswith(_OPTION_ROW_LENGTHS):
1486
            raise errors.BadIndexOptions(self)
1487
        try:
1488
            self._row_lengths = map(int, [length for length in
1489
                options_line[len(_OPTION_ROW_LENGTHS):].split(',')
1490
                if len(length)])
1491
        except ValueError:
1492
            raise errors.BadIndexOptions(self)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1493
        self._compute_row_offsets()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1494
1495
        # calculate the bytes we have processed
1496
        header_end = (len(signature) + sum(map(len, lines[0:4])) + 4)
1497
        return header_end, bytes[header_end:]
1498
1499
    def _read_nodes(self, nodes):
1500
        """Read some nodes from disk into the LRU cache.
1501
1502
        This performs a readv to get the node data into memory, and parses each
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1503
        node, then yields it to the caller. The nodes are requested in the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1504
        supplied order. If possible doing sort() on the list before requesting
1505
        a read may improve performance.
1506
1507
        :param nodes: The nodes to read. 0 - first node, 1 - second node etc.
1508
        :return: None
1509
        """
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1510
        # may be the byte string of the whole file
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1511
        bytes = None
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1512
        # list of (offset, length) regions of the file that should, evenually
1513
        # be read in to data_ranges, either from 'bytes' or from the transport
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1514
        ranges = []
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1515
        base_offset = self._base_offset
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1516
        for index in nodes:
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1517
            offset = (index * _PAGE_SIZE)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1518
            size = _PAGE_SIZE
1519
            if index == 0:
1520
                # Root node - special case
1521
                if self._size:
1522
                    size = min(_PAGE_SIZE, self._size)
1523
                else:
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1524
                    # The only case where we don't know the size, is for very
1525
                    # small indexes. So we read the whole thing
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1526
                    bytes = self._transport.get_bytes(self._name)
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1527
                    num_bytes = len(bytes)
1528
                    self._size = num_bytes - base_offset
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1529
                    # the whole thing should be parsed out of 'bytes'
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1530
                    ranges = [(start, min(_PAGE_SIZE, num_bytes - start))
1531
                        for start in xrange(base_offset, num_bytes, _PAGE_SIZE)]
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1532
                    break
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1533
            else:
3763.8.6 by John Arbash Meinel
Fix the logic a bit, and add a bit more tweaking opportunities
1534
                if offset > self._size:
1535
                    raise AssertionError('tried to read past the end'
1536
                                         ' of the file %s > %s'
1537
                                         % (offset, self._size))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1538
                size = min(size, self._size - offset)
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1539
            ranges.append((base_offset + offset, size))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1540
        if not ranges:
1541
            return
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1542
        elif bytes is not None:
1543
            # already have the whole file
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1544
            data_ranges = [(start, bytes[start:start+size])
1545
                           for start, size in ranges]
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1546
        elif self._file is None:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1547
            data_ranges = self._transport.readv(self._name, ranges)
1548
        else:
1549
            data_ranges = []
1550
            for offset, size in ranges:
1551
                self._file.seek(offset)
1552
                data_ranges.append((offset, self._file.read(size)))
1553
        for offset, data in data_ranges:
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1554
            offset -= base_offset
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1555
            if offset == 0:
1556
                # extract the header
1557
                offset, data = self._parse_header_from_bytes(data)
1558
                if len(data) == 0:
1559
                    continue
1560
            bytes = zlib.decompress(data)
1561
            if bytes.startswith(_LEAF_FLAG):
5365.5.18 by John Arbash Meinel
Expose the new leaf node factory across the stack.
1562
                node = self._leaf_factory(bytes, self._key_length,
1563
                                          self.node_ref_lists)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1564
            elif bytes.startswith(_INTERNAL_FLAG):
1565
                node = _InternalNode(bytes)
1566
            else:
1567
                raise AssertionError("Unknown node type for %r" % bytes)
1568
            yield offset / _PAGE_SIZE, node
1569
1570
    def _signature(self):
1571
        """The file signature for this index type."""
1572
        return _BTSIGNATURE
1573
1574
    def validate(self):
1575
        """Validate that everything in the index can be accessed."""
1576
        # just read and parse every node.
1577
        self._get_root_node()
1578
        if len(self._row_lengths) > 1:
1579
            start_node = self._row_offsets[1]
1580
        else:
1581
            # We shouldn't be reading anything anyway
1582
            start_node = 1
1583
        node_end = self._row_offsets[-1]
1584
        for node in self._read_nodes(range(start_node, node_end)):
1585
            pass
1586
1587
5365.5.18 by John Arbash Meinel
Expose the new leaf node factory across the stack.
1588
_gcchk_factory = _LeafNode
1589
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1590
try:
4459.2.1 by Vincent Ladeuil
Use a consistent scheme for naming pyrex source files.
1591
    from bzrlib import _btree_serializer_pyx as _btree_serializer
5365.5.18 by John Arbash Meinel
Expose the new leaf node factory across the stack.
1592
    _gcchk_factory = _btree_serializer._parse_into_chk
4574.3.6 by Martin Pool
More warnings when failing to load extensions
1593
except ImportError, e:
4574.3.8 by Martin Pool
Only mutter extension load errors when they occur, and record for later
1594
    osutils.failed_to_load_extension(e)
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
1595
    from bzrlib import _btree_serializer_py as _btree_serializer