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Change the order of index refs and values to make the no-graph knit index easier.

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doc/developers/indices.txt
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signatures to operate would strive to keep the signatures and return
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values as similar as possible. e.g.::
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    GraphIndexBuilder - add_node(key, references, value)
 
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    GraphIndexBuilder - add_node(key, value, references)
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    IndexBuilder - add_node(key, value)
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    WhackyIndexBuilder - add_node(key, whackiness, value)
 
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    WhackyIndexBuilder - add_node(key, value, whackiness)
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as opposed to something quite different like::
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