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Fix remaining uses of deprecated apis within bzrlib.

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 * add testing news - testcasewithtransport
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 * add testing news skips with --one
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 * cleanup remnans of check_format in the BzrBranch constructor.
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 * upgrade from .bzr to a '.bzr-new', then do a bait and switch.
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 * document WorkingTree.create, branch.create, workingtree.create_standalone, branch.init deprecation.
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 * branch.clone duplicate code addressing