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first cut at merge from integration.

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BRANCH.TODO
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 * upgrade from .bzr to a '.bzr-new', then do a bait and switch.
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 * document WorkingTree.create, branch.create, workingtree.create_standalone, branch.init deprecation.
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 * merge in storage, use lockable files to reinstate permissions for checkout control files.
 
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 * deprecated_nonce to DEPRECATED_PARAMETER
 
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 * branch.clone duplicate code addressing