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Move working tree initialisation out from  Branch.initialize, deprecated Branch.initialize to Branch.create.

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 * cleanup remnans of check_format in the BzrBranch constructor.
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 * fixup test_outside_wt.test_http_log
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 * upgrade from .bzr to a '.bzr-new', then do a bait and switch.
 
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 * document WorkingTree.create, branch.create, workingtree.create_standalone, branch.init deprecation.
 
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 * merge in storage, use lockable files to reinstate permissions for checkout control files.