1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
|
/*
Copyright (C) 2007 Canonical Ltd
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Function equate_lines based on bdiff.c from Mercurial.
Copyright (C) 2005, 2006 Matt Mackall <mpm@selenic.com>
Functions unique_lcs/recurse_matches based on _patiencediff_py.py.
Copyright (C) 2005 Bram Cohen, Copyright (C) 2005, 2006 Canonical Ltd
*/
#include <stdlib.h>
#include <string.h>
#include <Python.h>
/* http://www.python.org/dev/peps/pep-0353/ */
#if PY_VERSION_HEX < 0x02050000 && !defined(PY_SSIZE_T_MIN)
typedef int Py_ssize_t;
#define PY_SSIZE_T_MAX INT_MAX
#define PY_SSIZE_T_MIN INT_MIN
#endif
#if defined(__GNUC__)
# define inline __inline__
#elif defined(_MSC_VER)
# define inline __inline
#else
# define inline
#endif
#define MIN(a, b) (((a) > (b)) ? (b) : (a))
#define MAX(a, b) (((a) > (b)) ? (a) : (b))
#define SENTINEL -1
enum {
OP_EQUAL = 0,
OP_INSERT,
OP_DELETE,
OP_REPLACE
};
/* values from this array need to correspont to the order of the enum above */
static char *opcode_names[] = {
"equal",
"insert",
"delete",
"replace",
};
struct line {
int hash; /* hash code of the string */
Py_ssize_t next; /* next line from the same equivalence class */
Py_ssize_t equiv; /* equivalence class */
Py_ssize_t len;
const char *data;
};
struct bucket {
Py_ssize_t a_head; /* first item in `a` from this equivalence class */
Py_ssize_t a_count;
Py_ssize_t b_head; /* first item in `b` from this equivalence class */
Py_ssize_t b_count;
Py_ssize_t a_pos;
Py_ssize_t b_pos;
};
struct hashtable {
Py_ssize_t last_a_pos;
Py_ssize_t last_b_pos;
Py_ssize_t size;
struct bucket *table;
};
struct matching_line {
Py_ssize_t a; /* index of the line in `a` */
Py_ssize_t b; /* index of the line in `b` */
};
struct matching_block {
Py_ssize_t a; /* index of the first line in `a` */
Py_ssize_t b; /* index of the first line in `b` */
Py_ssize_t len; /* length of the block */
};
struct matching_blocks {
struct matching_block *matches;
Py_ssize_t count;
};
struct opcode {
int tag;
Py_ssize_t i1;
Py_ssize_t i2;
Py_ssize_t j1;
Py_ssize_t j2;
};
typedef struct {
PyObject_HEAD
Py_ssize_t asize;
Py_ssize_t bsize;
struct line *a;
struct line *b;
struct hashtable hashtable;
Py_ssize_t *backpointers;
} PatienceSequenceMatcher;
static inline Py_ssize_t
bisect_left(Py_ssize_t *list, Py_ssize_t item, Py_ssize_t lo, Py_ssize_t hi)
{
while (lo < hi) {
Py_ssize_t mid = lo / 2 + hi / 2 + (lo % 2 + hi % 2) / 2;
if (list[mid] < item)
lo = mid + 1;
else
hi = mid;
}
return lo;
}
static inline int
compare_lines(struct line *a, struct line *b)
{
return ((a->hash != b->hash) || (a->len != b->len) ||
memcmp(a->data, b->data, a->len));
}
static inline int
find_equivalence_class(struct bucket *hashtable, Py_ssize_t hsize,
struct line *lines, struct line *ref_lines,
Py_ssize_t i)
{
Py_ssize_t j;
for (j = lines[i].hash & hsize; hashtable[j].b_head != SENTINEL; j = (j + 1) & hsize) {
if (!compare_lines(lines + i, ref_lines + hashtable[j].b_head)) {
break;
}
}
return j;
}
static int
equate_lines(struct hashtable *result,
struct line *lines_a, struct line *lines_b,
Py_ssize_t asize, Py_ssize_t bsize)
{
Py_ssize_t i, j, hsize;
struct bucket *hashtable;
/* check for overflow, we need the table to be at least bsize+1 */
if (bsize == PY_SSIZE_T_MAX) {
PyErr_SetNone(PyExc_OverflowError);
return 0;
}
/* build a hash table of the next highest power of 2 */
hsize = 1;
while (hsize < bsize + 1)
hsize *= 2;
hashtable = (struct bucket *)malloc(sizeof(struct bucket) * hsize);
if (hashtable == NULL) {
PyErr_NoMemory();
return 0;
}
/* initialise the hashtable */
for (i = 0; i < hsize; i++) {
hashtable[i].a_count = 0;
hashtable[i].b_count = 0;
hashtable[i].a_head = SENTINEL;
hashtable[i].b_head = SENTINEL;
}
hsize--;
/* add lines from lines_b to the hash table chains. iterating
backwards so the matching lines are sorted to the linked list
by the line number (because we are adding new lines to the
head of the list) */
for (i = bsize - 1; i >= 0; i--) {
/* find the first hashtable entry, which is either empty or contains
the same line as lines_b[i] */
j = find_equivalence_class(hashtable, hsize, lines_b, lines_b, i);
/* set the equivalence class */
lines_b[i].equiv = j;
/* add to the head of the equivalence class */
lines_b[i].next = hashtable[j].b_head;
hashtable[j].b_head = i;
hashtable[j].b_count++;
}
/* match items from lines_a to their equivalence class in lines_b.
again, iterating backwards for the right order of the linked lists */
for (i = asize - 1; i >= 0; i--) {
/* find the first hash entry, which is either empty or contains
the same line as lines_a[i] */
j = find_equivalence_class(hashtable, hsize, lines_a, lines_b, i);
/* set the equivalence class, even if we are not interested in this
line, because the values are not pre-filled */
lines_a[i].equiv = j;
/* we are not interested in lines which are not also in lines_b */
if (hashtable[j].b_head == SENTINEL)
continue;
/* add to the head of the equivalence class */
lines_a[i].next = hashtable[j].a_head;
hashtable[j].a_head = i;
hashtable[j].a_count++;
}
result->last_a_pos = -1;
result->last_b_pos = -1;
result->size = hsize + 1;
result->table = hashtable;
return 1;
}
/* Finds longest common subsequence of unique lines in a[alo:ahi] and
b[blo:bhi].
Parameter backpointers must have allocated memory for at least
4 * (bhi - blo) ints. */
Py_ssize_t
unique_lcs(struct matching_line *answer,
struct hashtable *hashtable, Py_ssize_t *backpointers,
struct line *lines_a, struct line *lines_b,
Py_ssize_t alo, Py_ssize_t blo, Py_ssize_t ahi, Py_ssize_t bhi)
{
Py_ssize_t i, k, equiv, apos, bpos, norm_apos, norm_bpos, bsize, stacksize;
Py_ssize_t *stacks, *lasts, *btoa;
struct bucket *h;
k = 0;
stacksize = 0;
bsize = bhi - blo;
h = hashtable->table;
/* "unpack" the allocated memory */
stacks = backpointers + bsize;
lasts = stacks + bsize;
btoa = lasts + bsize;
/* initialise the backpointers */
for (i = 0; i < bsize; i++)
backpointers[i] = SENTINEL;
if (hashtable->last_a_pos == -1 || hashtable->last_a_pos > alo)
for (i = 0; i < hashtable->size; i++)
h[i].a_pos = h[i].a_head;
hashtable->last_a_pos = alo;
if (hashtable->last_b_pos == -1 || hashtable->last_b_pos > blo)
for (i = 0; i < hashtable->size; i++)
h[i].b_pos = h[i].b_head;
hashtable->last_b_pos = blo;
for (bpos = blo; bpos < bhi; bpos++) {
equiv = lines_b[bpos].equiv;
/* no lines in a or b */
if (h[equiv].a_count == 0 || h[equiv].b_count == 0)
continue;
/* find an unique line in lines_a that matches lines_b[bpos]
if we find more than one line within the range alo:ahi,
jump to the next line from lines_b immediately */
apos = SENTINEL;
/* loop through all lines in the linked list */
for (i = h[equiv].a_pos; i != SENTINEL; i = lines_a[i].next) {
/* the index is lower than alo, the the next line */
if (i < alo) {
h[equiv].a_pos = i;
continue;
}
/* the index is higher than ahi, stop searching */
if (i >= ahi)
break;
/* if the line is within our range, check if it's a duplicate */
if (apos != SENTINEL)
goto nextb;
/* save index to the line */
apos = i;
}
/* this line has no equivalent in lines_a[alo:ahi] */
if (apos == SENTINEL)
goto nextb;
/* check for duplicates of this line in lines_b[blo:bhi] */
/* loop through all lines in the linked list */
for (i = h[equiv].b_pos; i != SENTINEL; i = lines_b[i].next) {
/* the index is lower than blo, the the next line */
if (i < blo) {
h[equiv].b_pos = i;
continue;
}
/* the index is higher than bhi, stop searching */
if (i >= bhi)
break;
/* if this isn't the line with started with and it's within
our range, it's a duplicate */
if (i != bpos)
goto nextb;
}
/* use normalised indexes ([0,ahi-alo) instead of [alo,ahi))
for the patience sorting algorithm */
norm_bpos = bpos - blo;
norm_apos = apos - alo;
btoa[norm_bpos] = norm_apos;
/*
Ok, how does this work...
We have a list of matching lines from two lists, a and b. These
matches are stored in variable `btoa`. As we are iterating over this
table by bpos, the lines from b already form an increasing sequence.
We need to "sort" also the lines from a using the patience sorting
algorithm, ignoring the lines which would need to be swapped.
http://en.wikipedia.org/wiki/Patience_sorting
For each pair of lines, we need to place the line from a on either
an existing pile that has higher value on the top or create a new
pile. Variable `stacks` represents the tops of these piles and in
variable `lasts` we store the lines from b, that correspond to the
lines from a in `stacks`.
Whenever we place a new line on top of a pile, we store a
backpointer to the line (b) from top of the previous pile. This means
that after the loop, variable `backpointers` will contain an index
to the previous matching lines that forms an increasing sequence
(over both indexes a and b) with the current matching lines. If
either index a or b of the previous matching lines would be higher
than indexes of the current one or if the indexes of the current
one are 0, it will contain SENTINEL.
To construct the LCS, we will just need to follow these backpointers
from the top of the last pile and stop when we reach SENTINEL.
*/
/* as an optimization, check if the next line comes at the end,
because it usually does */
if (stacksize && stacks[stacksize - 1] < norm_apos)
k = stacksize;
/* as an optimization, check if the next line comes right after
the previous line, because usually it does */
else if (stacksize && (stacks[k] < norm_apos) &&
(k == stacksize - 1 || stacks[k + 1] > norm_apos))
k += 1;
else
k = bisect_left(stacks, norm_apos, 0, stacksize);
if (k > 0)
backpointers[norm_bpos] = lasts[k - 1];
if (k < stacksize) {
stacks[k] = norm_apos;
lasts[k] = norm_bpos;
}
else {
stacks[stacksize] = norm_apos;
lasts[stacksize] = norm_bpos;
stacksize += 1;
}
nextb:
;
}
if (stacksize == 0)
return 0;
/* backtrace the structures to find the LCS */
i = 0;
k = lasts[stacksize - 1];
while (k != SENTINEL) {
answer[i].a = btoa[k];
answer[i].b = k;
k = backpointers[k];
i++;
}
return i;
}
/* Adds a new line to the list of matching blocks, either extending the
current block or adding a new one. */
static inline void
add_matching_line(struct matching_blocks *answer, Py_ssize_t a, Py_ssize_t b)
{
Py_ssize_t last_index = answer->count - 1;
if ((last_index >= 0) &&
(a == answer->matches[last_index].a +
answer->matches[last_index].len) &&
(b == answer->matches[last_index].b +
answer->matches[last_index].len)) {
/* enlarge the last block */
answer->matches[last_index].len++;
}
else {
/* create a new block */
last_index++;
answer->matches[last_index].a = a;
answer->matches[last_index].b = b;
answer->matches[last_index].len = 1;
answer->count++;
}
}
static int
recurse_matches(struct matching_blocks *answer, struct hashtable *hashtable,
Py_ssize_t *backpointers, struct line *a, struct line *b,
Py_ssize_t alo, Py_ssize_t blo, Py_ssize_t ahi, Py_ssize_t bhi,
int maxrecursion)
{
int res;
Py_ssize_t new, last_a_pos, last_b_pos, lcs_size, nahi, nbhi, i, apos, bpos;
struct matching_line *lcs;
if (maxrecursion < 0)
return 1;
if (alo == ahi || blo == bhi)
return 1;
new = 0;
last_a_pos = alo - 1;
last_b_pos = blo - 1;
lcs = (struct matching_line *)malloc(sizeof(struct matching_line) * (bhi - blo));
if (lcs == NULL)
return 0;
lcs_size = unique_lcs(lcs, hashtable, backpointers, a, b, alo, blo, ahi, bhi);
/* recurse between lines which are unique in each file and match */
for (i = lcs_size - 1; i >= 0; i--) {
apos = alo + lcs[i].a;
bpos = blo + lcs[i].b;
if (last_a_pos + 1 != apos || last_b_pos + 1 != bpos) {
res = recurse_matches(answer, hashtable,
backpointers, a, b,
last_a_pos + 1, last_b_pos + 1,
apos, bpos, maxrecursion - 1);
if (!res)
goto error;
}
last_a_pos = apos;
last_b_pos = bpos;
add_matching_line(answer, apos, bpos);
new = 1;
}
free(lcs);
lcs = NULL;
/* find matches between the last match and the end */
if (new > 0) {
res = recurse_matches(answer, hashtable,
backpointers, a, b,
last_a_pos + 1, last_b_pos + 1,
ahi, bhi, maxrecursion - 1);
if (!res)
goto error;
}
/* find matching lines at the very beginning */
else if (a[alo].equiv == b[blo].equiv) {
while (alo < ahi && blo < bhi && a[alo].equiv == b[blo].equiv)
add_matching_line(answer, alo++, blo++);
res = recurse_matches(answer, hashtable,
backpointers, a, b,
alo, blo, ahi, bhi, maxrecursion - 1);
if (!res)
goto error;
}
/* find matching lines at the very end */
else if (a[ahi - 1].equiv == b[bhi - 1].equiv) {
nahi = ahi - 1;
nbhi = bhi - 1;
while (nahi > alo && nbhi > blo && a[nahi - 1].equiv == b[nbhi - 1].equiv) {
nahi--;
nbhi--;
}
res = recurse_matches(answer, hashtable,
backpointers, a, b,
last_a_pos + 1, last_b_pos + 1,
nahi, nbhi, maxrecursion - 1);
if (!res)
goto error;
for (i = 0; i < ahi - nahi; i++)
add_matching_line(answer, nahi + i, nbhi + i);
}
return 1;
error:
free(lcs);
return 0;
}
static Py_ssize_t
load_lines(PyObject *orig, struct line **lines)
{
Py_ssize_t size, i, j;
int h;
char *p;
struct line *line;
PyObject *seq, *item;
seq = PySequence_Fast(orig, "sequence expected");
if (seq == NULL) {
return -1;
}
size = PySequence_Fast_GET_SIZE(seq);
if (size == 0) {
Py_DECREF(seq);
return 0;
}
line = *lines = (struct line *)malloc(sizeof(struct line) * size);
if (line == NULL) {
PyErr_NoMemory();
Py_DECREF(seq);
return -1;
}
for (i = 0; i < size; i++) {
item = PySequence_Fast_GET_ITEM(seq, i);
if (!PyString_Check(item)){
PyErr_Format(PyExc_TypeError,
"sequence item %zd: expected string,"
" %.80s found",
i, item->ob_type->tp_name);
Py_DECREF(seq);
return -1;
}
line->len = PyString_GET_SIZE(item);
line->data = p = PyString_AS_STRING(item);
/* 'djb2' hash. This gives us a nice compromise between fast hash
function and a hash with less collisions. The algorithm doesn't
use the hash for actual lookups, only for building the table
so a better hash function wouldn't bring us much benefit, but
would make this loading code slower. */
h = 5381;
for (j = 0; j < line->len; j++)
h = ((h << 5) + h) + *p++;
line->hash = h;
line->next = SENTINEL;
line++;
}
Py_DECREF(seq);
return size;
}
static PyObject *
py_unique_lcs(PyObject *self, PyObject *args)
{
PyObject *aseq, *bseq, *res, *item;
Py_ssize_t asize, bsize, i, nmatches, *backpointers = NULL;
struct line *a = NULL, *b = NULL;
struct matching_line *matches = NULL;
struct hashtable hashtable;
if (!PyArg_ParseTuple(args, "OO", &aseq, &bseq))
return NULL;
hashtable.table = NULL;
asize = load_lines(aseq, &a);
bsize = load_lines(bseq, &b);
if (asize == -1 || bsize == -1)
goto error;
if (!equate_lines(&hashtable, a, b, asize, bsize))
goto error;
matches = (struct matching_line *)malloc(sizeof(struct matching_line) * bsize);
if (matches == NULL)
goto error;
backpointers = (Py_ssize_t *)malloc(sizeof(Py_ssize_t) * bsize * 4);
if (backpointers == NULL)
goto error;
nmatches = unique_lcs(matches, &hashtable, backpointers, a, b, 0, 0, asize, bsize);
res = PyList_New(nmatches);
for (i = 0; i < nmatches; i++) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("ii", matches[nmatches - i - 1].a, matches[nmatches - i - 1].b);
#else
item = Py_BuildValue("nn", matches[nmatches - i - 1].a, matches[nmatches - i - 1].b);
#endif
if (item == NULL)
goto error;
if (PyList_SetItem(res, i, item) != 0)
goto error;
}
free(backpointers);
free(matches);
free(hashtable.table);
free(b);
free(a);
return res;
error:
free(backpointers);
free(matches);
free(hashtable.table);
free(b);
free(a);
return NULL;
}
static PyObject *
py_recurse_matches(PyObject *self, PyObject *args)
{
PyObject *aseq, *bseq, *item, *answer;
int maxrecursion, res;
Py_ssize_t i, j, asize, bsize, alo, blo, ahi, bhi;
Py_ssize_t *backpointers = NULL;
struct line *a = NULL, *b = NULL;
struct hashtable hashtable;
struct matching_blocks matches;
#if PY_VERSION_HEX < 0x02050000
if (!PyArg_ParseTuple(args, "OOiiiiOi", &aseq, &bseq, &alo, &blo,
&ahi, &bhi, &answer, &maxrecursion))
#else
if (!PyArg_ParseTuple(args, "OOnnnnOi", &aseq, &bseq, &alo, &blo,
&ahi, &bhi, &answer, &maxrecursion))
#endif
return NULL;
hashtable.table = NULL;
matches.matches = NULL;
asize = load_lines(aseq, &a);
bsize = load_lines(bseq, &b);
if (asize == -1 || bsize == -1)
goto error;
if (!equate_lines(&hashtable, a, b, asize, bsize))
goto error;
matches.count = 0;
matches.matches = (struct matching_block *)malloc(sizeof(struct matching_block) * bsize);
if (matches.matches == NULL)
goto error;
backpointers = (Py_ssize_t *)malloc(sizeof(Py_ssize_t) * bsize * 4);
if (backpointers == NULL)
goto error;
res = recurse_matches(&matches, &hashtable, backpointers,
a, b, alo, blo, ahi, bhi, maxrecursion);
if (!res)
goto error;
for (i = 0; i < matches.count; i++) {
for (j = 0; j < matches.matches[i].len; j++) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("ii", matches.matches[i].a + j,
matches.matches[i].b + j);
#else
item = Py_BuildValue("nn", matches.matches[i].a + j,
matches.matches[i].b + j);
#endif
if (item == NULL)
goto error;
if (PyList_Append(answer, item) != 0)
goto error;
}
}
free(backpointers);
free(matches.matches);
free(hashtable.table);
free(b);
free(a);
Py_RETURN_NONE;
error:
free(backpointers);
free(matches.matches);
free(hashtable.table);
free(b);
free(a);
return NULL;
}
static PyObject *
PatienceSequenceMatcher_new(PyTypeObject *type, PyObject *args, PyObject *kwds)
{
PyObject *junk, *a, *b;
PatienceSequenceMatcher *self;
self = (PatienceSequenceMatcher *)type->tp_alloc(type, 0);
if (self != NULL) {
if (!PyArg_ParseTuple(args, "OOO", &junk, &a, &b)) {
Py_DECREF(self);
return NULL;
}
self->asize = load_lines(a, &(self->a));
self->bsize = load_lines(b, &(self->b));
if (self->asize == -1 || self->bsize == -1) {
Py_DECREF(self);
return NULL;
}
if (!equate_lines(&self->hashtable, self->a, self->b, self->asize, self->bsize)) {
Py_DECREF(self);
return NULL;
}
self->backpointers = (Py_ssize_t *)malloc(sizeof(Py_ssize_t) * self->bsize * 4);
if (self->backpointers == NULL) {
Py_DECREF(self);
return NULL;
}
}
return (PyObject *)self;
}
static void
PatienceSequenceMatcher_dealloc(PatienceSequenceMatcher* self)
{
free(self->backpointers);
free(self->hashtable.table);
free(self->b);
free(self->a);
self->ob_type->tp_free((PyObject *)self);
}
static char PatienceSequenceMatcher_get_matching_blocks_doc[] =
"Return list of triples describing matching subsequences.\n"
"\n"
"Each triple is of the form (i, j, n), and means that\n"
"a[i:i+n] == b[j:j+n]. The triples are monotonically increasing in\n"
"i and in j.\n"
"\n"
"The last triple is a dummy, (len(a), len(b), 0), and is the only\n"
"triple with n==0.\n"
"\n"
">>> s = PatienceSequenceMatcher(None, \"abxcd\", \"abcd\")\n"
">>> s.get_matching_blocks()\n"
"[(0, 0, 2), (3, 2, 2), (5, 4, 0)]\n";
static PyObject *
PatienceSequenceMatcher_get_matching_blocks(PatienceSequenceMatcher* self)
{
PyObject *answer, *item;
int res;
Py_ssize_t i;
struct matching_blocks matches;
matches.count = 0;
matches.matches = (struct matching_block *)malloc(sizeof(struct matching_block) * self->bsize);
if (matches.matches == NULL)
return PyErr_NoMemory();
res = recurse_matches(&matches, &self->hashtable, self->backpointers,
self->a, self->b, 0, 0,
self->asize, self->bsize, 10);
if (!res) {
free(matches.matches);
return PyErr_NoMemory();
}
answer = PyList_New(matches.count + 1);
if (answer == NULL) {
free(matches.matches);
return NULL;
}
for (i = 0; i < matches.count; i++) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("iii", matches.matches[i].a,
matches.matches[i].b, matches.matches[i].len);
#else
item = Py_BuildValue("nnn", matches.matches[i].a,
matches.matches[i].b, matches.matches[i].len);
#endif
if (item == NULL)
goto error;
if (PyList_SetItem(answer, i, item) != 0)
goto error;
}
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("iii", self->asize, self->bsize, 0);
#else
item = Py_BuildValue("nnn", self->asize, self->bsize, 0);
#endif
if (item == NULL)
goto error;
if (PyList_SetItem(answer, i, item) != 0)
goto error;
free(matches.matches);
return answer;
error:
free(matches.matches);
Py_DECREF(answer);
return NULL;
}
static char PatienceSequenceMatcher_get_opcodes_doc[] =
"Return list of 5-tuples describing how to turn a into b.\n"
"\n"
"Each tuple is of the form (tag, i1, i2, j1, j2). The first tuple\n"
"has i1 == j1 == 0, and remaining tuples have i1 == the i2 from the\n"
"tuple preceding it, and likewise for j1 == the previous j2.\n"
"\n"
"The tags are strings, with these meanings:\n"
"\n"
"'replace': a[i1:i2] should be replaced by b[j1:j2]\n"
"'delete': a[i1:i2] should be deleted.\n"
" Note that j1==j2 in this case.\n"
"'insert': b[j1:j2] should be inserted at a[i1:i1].\n"
" Note that i1==i2 in this case.\n"
"'equal': a[i1:i2] == b[j1:j2]\n"
"\n"
">>> a = \"qabxcd\"\n"
">>> b = \"abycdf\"\n"
">>> s = PatienceSequenceMatcher(None, a, b)\n"
">>> for tag, i1, i2, j1, j2 in s.get_opcodes():\n"
"... print (\"%7s a[%d:%d] (%s) b[%d:%d] (%s)\" %\n"
"... (tag, i1, i2, a[i1:i2], j1, j2, b[j1:j2]))\n"
" delete a[0:1] (q) b[0:0] ()\n"
" equal a[1:3] (ab) b[0:2] (ab)\n"
"replace a[3:4] (x) b[2:3] (y)\n"
" equal a[4:6] (cd) b[3:5] (cd)\n"
" insert a[6:6] () b[5:6] (f)\n";
static PyObject *
PatienceSequenceMatcher_get_opcodes(PatienceSequenceMatcher* self)
{
PyObject *answer, *item;
Py_ssize_t i, j, k, ai, bj;
int tag, res;
struct matching_blocks matches;
matches.count = 0;
matches.matches = (struct matching_block *)malloc(sizeof(struct matching_block) * (self->bsize + 1));
if (matches.matches == NULL)
return PyErr_NoMemory();
res = recurse_matches(&matches, &self->hashtable, self->backpointers,
self->a, self->b, 0, 0,
self->asize, self->bsize, 10);
if (!res) {
free(matches.matches);
return PyErr_NoMemory();
}
matches.matches[matches.count].a = self->asize;
matches.matches[matches.count].b = self->bsize;
matches.matches[matches.count].len = 0;
matches.count++;
answer = PyList_New(0);
if (answer == NULL) {
free(matches.matches);
return NULL;
}
i = j = 0;
for (k = 0; k < matches.count; k++) {
ai = matches.matches[k].a;
bj = matches.matches[k].b;
tag = -1;
if (i < ai && j < bj)
tag = OP_REPLACE;
else if (i < ai)
tag = OP_DELETE;
else if (j < bj)
tag = OP_INSERT;
if (tag != -1) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("siiii", opcode_names[tag], i, ai, j, bj);
#else
item = Py_BuildValue("snnnn", opcode_names[tag], i, ai, j, bj);
#endif
if (item == NULL)
goto error;
if (PyList_Append(answer, item) != 0)
goto error;
}
i = ai + matches.matches[k].len;
j = bj + matches.matches[k].len;
if (matches.matches[k].len > 0) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("siiii", opcode_names[OP_EQUAL], ai, i, bj, j);
#else
item = Py_BuildValue("snnnn", opcode_names[OP_EQUAL], ai, i, bj, j);
#endif
if (item == NULL)
goto error;
if (PyList_Append(answer, item) != 0)
goto error;
}
}
free(matches.matches);
return answer;
error:
free(matches.matches);
Py_DECREF(answer);
return NULL;
}
static char PatienceSequenceMatcher_get_grouped_opcodes_doc[] =
"Isolate change clusters by eliminating ranges with no changes.\n"
"\n"
"Return a list of groups with upto n lines of context.\n"
"Each group is in the same format as returned by get_opcodes().\n"
"\n"
">>> from pprint import pprint\n"
">>> a = map(str, range(1,40))\n"
">>> b = a[:]\n"
">>> b[8:8] = ['i'] # Make an insertion\n"
">>> b[20] += 'x' # Make a replacement\n"
">>> b[23:28] = [] # Make a deletion\n"
">>> b[30] += 'y' # Make another replacement\n"
">>> pprint(PatienceSequenceMatcher(None,a,b).get_grouped_opcodes())\n"
"[[('equal', 5, 8, 5, 8), ('insert', 8, 8, 8, 9), ('equal', 8, 11, 9, 12)],\n"
" [('equal', 16, 19, 17, 20),\n"
" ('replace', 19, 20, 20, 21),\n"
" ('equal', 20, 22, 21, 23),\n"
" ('delete', 22, 27, 23, 23),\n"
" ('equal', 27, 30, 23, 26)],\n"
" [('equal', 31, 34, 27, 30),\n"
" ('replace', 34, 35, 30, 31),\n"
" ('equal', 35, 38, 31, 34)]]\n";
static PyObject *
PatienceSequenceMatcher_get_grouped_opcodes(PatienceSequenceMatcher* self,
PyObject *args)
{
PyObject *answer, *group, *item;
Py_ssize_t i, j, k, ai, bj, size, ncodes, tag;
Py_ssize_t i1, i2, j1, j2;
int n = 3, nn, res;
struct matching_blocks matches;
struct opcode *codes;
if (!PyArg_ParseTuple(args, "|i", &n))
return NULL;
matches.count = 0;
matches.matches = (struct matching_block *)malloc(sizeof(struct matching_block) * (self->bsize + 1));
if (matches.matches == NULL)
return PyErr_NoMemory();
res = recurse_matches(&matches, &self->hashtable, self->backpointers,
self->a, self->b, 0, 0,
self->asize, self->bsize, 10);
if (!res) {
free(matches.matches);
return PyErr_NoMemory();
}
matches.matches[matches.count].a = self->asize;
matches.matches[matches.count].b = self->bsize;
matches.matches[matches.count].len = 0;
matches.count++;
ncodes = 0;
codes = (struct opcode *)malloc(sizeof(struct opcode) * matches.count * 2);
if (codes == NULL) {
free(matches.matches);
return PyErr_NoMemory();
}
i = j = 0;
for (k = 0; k < matches.count; k++) {
ai = matches.matches[k].a;
bj = matches.matches[k].b;
tag = -1;
if (i < ai && j < bj)
tag = OP_REPLACE;
else if (i < ai)
tag = OP_DELETE;
else if (j < bj)
tag = OP_INSERT;
if (tag != -1) {
codes[ncodes].tag = tag;
codes[ncodes].i1 = i;
codes[ncodes].i2 = ai;
codes[ncodes].j1 = j;
codes[ncodes].j2 = bj;
ncodes++;
}
i = ai + matches.matches[k].len;
j = bj + matches.matches[k].len;
if (matches.matches[k].len > 0) {
codes[ncodes].tag = OP_EQUAL;
codes[ncodes].i1 = ai;
codes[ncodes].i2 = i;
codes[ncodes].j1 = bj;
codes[ncodes].j2 = j;
ncodes++;
}
}
if (ncodes == 0) {
codes[ncodes].tag = OP_EQUAL;
codes[ncodes].i1 = 0;
codes[ncodes].i2 = 1;
codes[ncodes].j1 = 0;
codes[ncodes].j2 = 1;
ncodes++;
}
/* fixup leading and trailing groups if they show no changes. */
if (codes[0].tag == OP_EQUAL) {
codes[0].i1 = MAX(codes[0].i1, codes[0].i2 - n);
codes[0].j1 = MAX(codes[0].j1, codes[0].j2 - n);
}
if (codes[ncodes - 1].tag == OP_EQUAL) {
codes[ncodes - 1].i2 = MIN(codes[ncodes - 1].i2,
codes[ncodes - 1].i1 + n);
codes[ncodes - 1].j2 = MIN(codes[ncodes - 1].j2,
codes[ncodes - 1].j1 + n);
}
group = NULL;
answer = PyList_New(0);
if (answer == NULL)
goto error;
group = PyList_New(0);
if (group == NULL)
goto error;
nn = n + n;
tag = -1;
for (i = 0; i < ncodes; i++) {
tag = codes[i].tag;
i1 = codes[i].i1;
i2 = codes[i].i2;
j1 = codes[i].j1;
j2 = codes[i].j2;
/* end the current group and start a new one whenever
there is a large range with no changes. */
if (tag == OP_EQUAL && i2 - i1 > nn) {
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("siiii", opcode_names[tag],
i1, MIN(i2, i1 + n), j1, MIN(j2, j1 + n));
#else
item = Py_BuildValue("snnnn", opcode_names[tag],
i1, MIN(i2, i1 + n), j1, MIN(j2, j1 + n));
#endif
if (item == NULL)
goto error;
if (PyList_Append(group, item) != 0)
goto error;
if (PyList_Append(answer, group) != 0)
goto error;
group = PyList_New(0);
if (group == NULL)
goto error;
i1 = MAX(i1, i2 - n);
j1 = MAX(j1, j2 - n);
}
#if PY_VERSION_HEX < 0x02050000
item = Py_BuildValue("siiii", opcode_names[tag], i1, i2, j1 ,j2);
#else
item = Py_BuildValue("snnnn", opcode_names[tag], i1, i2, j1 ,j2);
#endif
if (item == NULL)
goto error;
if (PyList_Append(group, item) != 0)
goto error;
}
size = PyList_Size(group);
if (size > 0 && !(size == 1 && tag == OP_EQUAL)) {
if (PyList_Append(answer, group) != 0)
goto error;
}
else
Py_DECREF(group);
free(codes);
free(matches.matches);
return answer;
error:
free(codes);
free(matches.matches);
Py_DECREF(group);
Py_DECREF(answer);
return NULL;
}
static PyMethodDef PatienceSequenceMatcher_methods[] = {
{"get_matching_blocks",
(PyCFunction)PatienceSequenceMatcher_get_matching_blocks,
METH_NOARGS,
PatienceSequenceMatcher_get_matching_blocks_doc},
{"get_opcodes",
(PyCFunction)PatienceSequenceMatcher_get_opcodes,
METH_NOARGS,
PatienceSequenceMatcher_get_opcodes_doc},
{"get_grouped_opcodes",
(PyCFunction)PatienceSequenceMatcher_get_grouped_opcodes,
METH_VARARGS,
PatienceSequenceMatcher_get_grouped_opcodes_doc},
{NULL}
};
static char PatienceSequenceMatcher_doc[] =
"C implementation of PatienceSequenceMatcher";
static PyTypeObject PatienceSequenceMatcherType = {
PyObject_HEAD_INIT(NULL)
0, /* ob_size */
"PatienceSequenceMatcher", /* tp_name */
sizeof(PatienceSequenceMatcher), /* tp_basicsize */
0, /* tp_itemsize */
(destructor)PatienceSequenceMatcher_dealloc, /* tp_dealloc */
0, /* tp_print */
0, /* tp_getattr */
0, /* tp_setattr */
0, /* tp_compare */
0, /* tp_repr */
0, /* tp_as_number */
0, /* tp_as_sequence */
0, /* tp_as_mapping */
0, /* tp_hash */
0, /* tp_call */
0, /* tp_str */
0, /* tp_getattro */
0, /* tp_setattro */
0, /* tp_as_buffer */
Py_TPFLAGS_DEFAULT, /* tp_flags*/
PatienceSequenceMatcher_doc, /* tp_doc */
0, /* tp_traverse */
0, /* tp_clear */
0, /* tp_richcompare */
0, /* tp_weaklistoffset */
0, /* tp_iter */
0, /* tp_iternext */
PatienceSequenceMatcher_methods, /* tp_methods */
0, /* tp_members */
0, /* tp_getset */
0, /* tp_base */
0, /* tp_dict */
0, /* tp_descr_get */
0, /* tp_descr_set */
0, /* tp_dictoffset */
0, /* tp_init */
0, /* tp_alloc */
PatienceSequenceMatcher_new, /* tp_new */
};
static PyMethodDef cpatiencediff_methods[] = {
{"unique_lcs_c", py_unique_lcs, METH_VARARGS},
{"recurse_matches_c", py_recurse_matches, METH_VARARGS},
{NULL, NULL}
};
PyMODINIT_FUNC
init_patiencediff_c(void)
{
PyObject* m;
if (PyType_Ready(&PatienceSequenceMatcherType) < 0)
return;
m = Py_InitModule3("_patiencediff_c", cpatiencediff_methods,
"C implementation of PatienceSequenceMatcher");
if (m == NULL)
return;
Py_INCREF(&PatienceSequenceMatcherType);
PyModule_AddObject(m, "PatienceSequenceMatcher_c",
(PyObject *)&PatienceSequenceMatcherType);
}
|