186
180
combine mem with the first and second indexes, creating a new one of
187
181
size 4x. On the fifth create a single new one, etc.
189
if self._combine_backing_indices:
190
(new_backing_file, size,
191
backing_pos) = self._spill_mem_keys_and_combine()
193
new_backing_file, size = self._spill_mem_keys_without_combining()
194
# Note: The transport here isn't strictly needed, because we will use
195
# direct access to the new_backing._file object
196
new_backing = BTreeGraphIndex(get_transport('.'), '<temp>', size)
197
# GC will clean up the file
198
new_backing._file = new_backing_file
199
if self._combine_backing_indices:
200
if len(self._backing_indices) == backing_pos:
201
self._backing_indices.append(None)
202
self._backing_indices[backing_pos] = new_backing
203
for backing_pos in range(backing_pos):
204
self._backing_indices[backing_pos] = None
206
self._backing_indices.append(new_backing)
208
self._nodes_by_key = None
210
def _spill_mem_keys_without_combining(self):
211
return self._write_nodes(self._iter_mem_nodes(), allow_optimize=False)
213
def _spill_mem_keys_and_combine(self):
214
183
iterators_to_combine = [self._iter_mem_nodes()]
216
185
for pos, backing in enumerate(self._backing_indices):
220
189
iterators_to_combine.append(backing.iter_all_entries())
221
190
backing_pos = pos + 1
222
191
new_backing_file, size = \
223
self._write_nodes(self._iter_smallest(iterators_to_combine),
224
allow_optimize=False)
225
return new_backing_file, size, backing_pos
192
self._write_nodes(self._iter_smallest(iterators_to_combine))
193
dir_path, base_name = osutils.split(new_backing_file.name)
194
# Note: The transport here isn't strictly needed, because we will use
195
# direct access to the new_backing._file object
196
new_backing = BTreeGraphIndex(get_transport(dir_path),
198
# GC will clean up the file
199
new_backing._file = new_backing_file
200
if len(self._backing_indices) == backing_pos:
201
self._backing_indices.append(None)
202
self._backing_indices[backing_pos] = new_backing
203
for pos in range(backing_pos):
204
self._backing_indices[pos] = None
207
self._nodes_by_key = None
227
209
def add_nodes(self, nodes):
228
210
"""Add nodes to the index.
604
564
class _LeafNode(object):
605
565
"""A leaf node for a serialised B+Tree index."""
607
__slots__ = ('keys', 'min_key', 'max_key')
609
567
def __init__(self, bytes, key_length, ref_list_length):
610
568
"""Parse bytes to create a leaf node object."""
611
569
# splitlines mangles the \r delimiters.. don't use it.
612
key_list = _btree_serializer._parse_leaf_lines(bytes,
613
key_length, ref_list_length)
615
self.min_key = key_list[0][0]
616
self.max_key = key_list[-1][0]
618
self.min_key = self.max_key = None
619
self.keys = dict(key_list)
570
self.keys = dict(_btree_serializer._parse_leaf_lines(bytes,
571
key_length, ref_list_length))
622
574
class _InternalNode(object):
623
575
"""An internal node for a serialised B+Tree index."""
625
__slots__ = ('keys', 'offset')
627
577
def __init__(self, bytes):
628
578
"""Parse bytes to create an internal node object."""
629
579
# splitlines mangles the \r delimiters.. don't use it.
866
801
new_tips = next_tips
867
802
return final_offsets
869
def clear_cache(self):
870
"""Clear out any cached/memoized values.
872
This can be called at any time, but generally it is used when we have
873
extracted some information, but don't expect to be requesting any more
876
# Note that we don't touch self._root_node or self._internal_node_cache
877
# We don't expect either of those to be big, and it can save
878
# round-trips in the future. We may re-evaluate this if InternalNode
879
# memory starts to be an issue.
880
self._leaf_node_cache.clear()
882
def external_references(self, ref_list_num):
883
if self._root_node is None:
884
self._get_root_node()
885
if ref_list_num + 1 > self.node_ref_lists:
886
raise ValueError('No ref list %d, index has %d ref lists'
887
% (ref_list_num, self.node_ref_lists))
890
for node in self.iter_all_entries():
892
refs.update(node[3][ref_list_num])
895
804
def _find_layer_first_and_end(self, offset):
896
805
"""Find the start/stop nodes for the layer corresponding to offset.
1087
996
output.append(cur_out)
1090
def _walk_through_internal_nodes(self, keys):
1091
"""Take the given set of keys, and find the corresponding LeafNodes.
1093
:param keys: An unsorted iterable of keys to search for
1094
:return: (nodes, index_and_keys)
1095
nodes is a dict mapping {index: LeafNode}
1096
keys_at_index is a list of tuples of [(index, [keys for Leaf])]
1098
# 6 seconds spent in miss_torture using the sorted() line.
1099
# Even with out of order disk IO it seems faster not to sort it when
1100
# large queries are being made.
1101
keys_at_index = [(0, sorted(keys))]
1103
for row_pos, next_row_start in enumerate(self._row_offsets[1:-1]):
1104
node_indexes = [idx for idx, s_keys in keys_at_index]
1105
nodes = self._get_internal_nodes(node_indexes)
1107
next_nodes_and_keys = []
1108
for node_index, sub_keys in keys_at_index:
1109
node = nodes[node_index]
1110
positions = self._multi_bisect_right(sub_keys, node.keys)
1111
node_offset = next_row_start + node.offset
1112
next_nodes_and_keys.extend([(node_offset + pos, s_keys)
1113
for pos, s_keys in positions])
1114
keys_at_index = next_nodes_and_keys
1115
# We should now be at the _LeafNodes
1116
node_indexes = [idx for idx, s_keys in keys_at_index]
1118
# TODO: We may *not* want to always read all the nodes in one
1119
# big go. Consider setting a max size on this.
1120
nodes = self._get_leaf_nodes(node_indexes)
1121
return nodes, keys_at_index
1123
999
def iter_entries(self, keys):
1124
1000
"""Iterate over keys within the index.
1163
1039
needed_keys = keys
1164
1040
if not needed_keys:
1166
nodes, nodes_and_keys = self._walk_through_internal_nodes(needed_keys)
1042
# 6 seconds spent in miss_torture using the sorted() line.
1043
# Even with out of order disk IO it seems faster not to sort it when
1044
# large queries are being made.
1045
needed_keys = sorted(needed_keys)
1047
nodes_and_keys = [(0, needed_keys)]
1049
for row_pos, next_row_start in enumerate(self._row_offsets[1:-1]):
1050
node_indexes = [idx for idx, s_keys in nodes_and_keys]
1051
nodes = self._get_internal_nodes(node_indexes)
1053
next_nodes_and_keys = []
1054
for node_index, sub_keys in nodes_and_keys:
1055
node = nodes[node_index]
1056
positions = self._multi_bisect_right(sub_keys, node.keys)
1057
node_offset = next_row_start + node.offset
1058
next_nodes_and_keys.extend([(node_offset + pos, s_keys)
1059
for pos, s_keys in positions])
1060
nodes_and_keys = next_nodes_and_keys
1061
# We should now be at the _LeafNodes
1062
node_indexes = [idx for idx, s_keys in nodes_and_keys]
1064
# TODO: We may *not* want to always read all the nodes in one
1065
# big go. Consider setting a max size on this.
1067
nodes = self._get_leaf_nodes(node_indexes)
1167
1068
for node_index, sub_keys in nodes_and_keys:
1168
1069
if not sub_keys:
1177
1078
yield (self, next_sub_key, value)
1179
def _find_ancestors(self, keys, ref_list_num, parent_map, missing_keys):
1180
"""Find the parent_map information for the set of keys.
1182
This populates the parent_map dict and missing_keys set based on the
1183
queried keys. It also can fill out an arbitrary number of parents that
1184
it finds while searching for the supplied keys.
1186
It is unlikely that you want to call this directly. See
1187
"CombinedGraphIndex.find_ancestry()" for a more appropriate API.
1189
:param keys: A keys whose ancestry we want to return
1190
Every key will either end up in 'parent_map' or 'missing_keys'.
1191
:param ref_list_num: This index in the ref_lists is the parents we
1193
:param parent_map: {key: parent_keys} for keys that are present in this
1194
index. This may contain more entries than were in 'keys', that are
1195
reachable ancestors of the keys requested.
1196
:param missing_keys: keys which are known to be missing in this index.
1197
This may include parents that were not directly requested, but we
1198
were able to determine that they are not present in this index.
1199
:return: search_keys parents that were found but not queried to know
1200
if they are missing or present. Callers can re-query this index for
1201
those keys, and they will be placed into parent_map or missing_keys
1203
if not self.key_count():
1204
# We use key_count() to trigger reading the root node and
1205
# determining info about this BTreeGraphIndex
1206
# If we don't have any keys, then everything is missing
1207
missing_keys.update(keys)
1209
if ref_list_num >= self.node_ref_lists:
1210
raise ValueError('No ref list %d, index has %d ref lists'
1211
% (ref_list_num, self.node_ref_lists))
1213
# The main trick we are trying to accomplish is that when we find a
1214
# key listing its parents, we expect that the parent key is also likely
1215
# to sit on the same page. Allowing us to expand parents quickly
1216
# without suffering the full stack of bisecting, etc.
1217
nodes, nodes_and_keys = self._walk_through_internal_nodes(keys)
1219
# These are parent keys which could not be immediately resolved on the
1220
# page where the child was present. Note that we may already be
1221
# searching for that key, and it may actually be present [or known
1222
# missing] on one of the other pages we are reading.
1224
# We could try searching for them in the immediate previous or next
1225
# page. If they occur "later" we could put them in a pending lookup
1226
# set, and then for each node we read thereafter we could check to
1227
# see if they are present.
1228
# However, we don't know the impact of keeping this list of things
1229
# that I'm going to search for every node I come across from here on
1231
# It doesn't handle the case when the parent key is missing on a
1232
# page that we *don't* read. So we already have to handle being
1233
# re-entrant for that.
1234
# Since most keys contain a date string, they are more likely to be
1235
# found earlier in the file than later, but we would know that right
1236
# away (key < min_key), and wouldn't keep searching it on every other
1237
# page that we read.
1238
# Mostly, it is an idea, one which should be benchmarked.
1239
parents_not_on_page = set()
1241
for node_index, sub_keys in nodes_and_keys:
1244
# sub_keys is all of the keys we are looking for that should exist
1245
# on this page, if they aren't here, then they won't be found
1246
node = nodes[node_index]
1247
node_keys = node.keys
1248
parents_to_check = set()
1249
for next_sub_key in sub_keys:
1250
if next_sub_key not in node_keys:
1251
# This one is just not present in the index at all
1252
missing_keys.add(next_sub_key)
1254
value, refs = node_keys[next_sub_key]
1255
parent_keys = refs[ref_list_num]
1256
parent_map[next_sub_key] = parent_keys
1257
parents_to_check.update(parent_keys)
1258
# Don't look for things we've already found
1259
parents_to_check = parents_to_check.difference(parent_map)
1260
# this can be used to test the benefit of having the check loop
1262
# parents_not_on_page.update(parents_to_check)
1264
while parents_to_check:
1265
next_parents_to_check = set()
1266
for key in parents_to_check:
1267
if key in node_keys:
1268
value, refs = node_keys[key]
1269
parent_keys = refs[ref_list_num]
1270
parent_map[key] = parent_keys
1271
next_parents_to_check.update(parent_keys)
1273
# This parent either is genuinely missing, or should be
1274
# found on another page. Perf test whether it is better
1275
# to check if this node should fit on this page or not.
1276
# in the 'everything-in-one-pack' scenario, this *not*
1277
# doing the check is 237ms vs 243ms.
1278
# So slightly better, but I assume the standard 'lots
1279
# of packs' is going to show a reasonable improvement
1280
# from the check, because it avoids 'going around
1281
# again' for everything that is in another index
1282
# parents_not_on_page.add(key)
1283
# Missing for some reason
1284
if key < node.min_key:
1285
# in the case of bzr.dev, 3.4k/5.3k misses are
1286
# 'earlier' misses (65%)
1287
parents_not_on_page.add(key)
1288
elif key > node.max_key:
1289
# This parent key would be present on a different
1291
parents_not_on_page.add(key)
1293
# assert key != node.min_key and key != node.max_key
1294
# If it was going to be present, it would be on
1295
# *this* page, so mark it missing.
1296
missing_keys.add(key)
1297
parents_to_check = next_parents_to_check.difference(parent_map)
1298
# Might want to do another .difference() from missing_keys
1299
# parents_not_on_page could have been found on a different page, or be
1300
# known to be missing. So cull out everything that has already been
1302
search_keys = parents_not_on_page.difference(
1303
parent_map).difference(missing_keys)
1306
1080
def iter_entries_prefix(self, keys):
1307
1081
"""Iterate over keys within the index using prefix matching.
added
removed
bzrlib/btree_index.py
