~bzr-pqm/bzr/bzr.dev

4763.2.4 by John Arbash Meinel
merge bzr.2.1 in preparation for NEWS entry.
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# Copyright (C) 2008, 2009, 2010 Canonical Ltd
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is free software; you can redistribute it and/or modify
3641.3.29 by John Arbash Meinel
Cleanup the copyright headers
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
4183.7.1 by Sabin Iacob
update FSF mailing address
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# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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"""B+Tree indices"""
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4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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import cStringIO
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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from bisect import bisect_right
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import math
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import tempfile
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import zlib
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from bzrlib import (
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    chunk_writer,
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    debug,
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    errors,
4208.1.2 by John Arbash Meinel
Switch to using a FIFOCache.
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    fifo_cache,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    index,
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    lru_cache,
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    osutils,
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
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    static_tuple,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
35
    trace,
5273.1.7 by Vincent Ladeuil
No more use of the get_transport imported *symbol*, all uses are through
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    transport,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    )
38
from bzrlib.index import _OPTION_NODE_REFS, _OPTION_KEY_ELEMENTS, _OPTION_LEN
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3641.3.3 by John Arbash Meinel
Change the header to indicate these indexes are
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_BTSIGNATURE = "B+Tree Graph Index 2\n"
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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_OPTION_ROW_LENGTHS = "row_lengths="
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_LEAF_FLAG = "type=leaf\n"
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_INTERNAL_FLAG = "type=internal\n"
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_INTERNAL_OFFSET = "offset="
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_RESERVED_HEADER_BYTES = 120
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_PAGE_SIZE = 4096
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# 4K per page: 4MB - 1000 entries
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_NODE_CACHE_SIZE = 1000
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53
54
class _BuilderRow(object):
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    """The stored state accumulated while writing out a row in the index.
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57
    :ivar spool: A temporary file used to accumulate nodes for this row
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        in the tree.
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    :ivar nodes: The count of nodes emitted so far.
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    """
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    def __init__(self):
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        """Create a _BuilderRow."""
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        self.nodes = 0
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
65
        self.spool = None# tempfile.TemporaryFile(prefix='bzr-index-row-')
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.writer = None
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    def finish_node(self, pad=True):
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        byte_lines, _, padding = self.writer.finish()
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        if self.nodes == 0:
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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            self.spool = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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            # padded note:
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            self.spool.write("\x00" * _RESERVED_HEADER_BYTES)
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
74
        elif self.nodes == 1:
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            # We got bigger than 1 node, switch to a temp file
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            spool = tempfile.TemporaryFile(prefix='bzr-index-row-')
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            spool.write(self.spool.getvalue())
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            self.spool = spool
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        skipped_bytes = 0
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        if not pad and padding:
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            del byte_lines[-1]
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            skipped_bytes = padding
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        self.spool.writelines(byte_lines)
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
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        remainder = (self.spool.tell() + skipped_bytes) % _PAGE_SIZE
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        if remainder != 0:
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            raise AssertionError("incorrect node length: %d, %d"
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                                 % (self.spool.tell(), remainder))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.nodes += 1
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        self.writer = None
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class _InternalBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out internal rows."""
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    def finish_node(self, pad=True):
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        if not pad:
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            raise AssertionError("Must pad internal nodes only.")
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        _BuilderRow.finish_node(self)
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class _LeafBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out a leaf rows."""
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class BTreeBuilder(index.GraphIndexBuilder):
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    """A Builder for B+Tree based Graph indices.
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    The resulting graph has the structure:
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    _SIGNATURE OPTIONS NODES
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    _SIGNATURE     := 'B+Tree Graph Index 1' NEWLINE
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    OPTIONS        := REF_LISTS KEY_ELEMENTS LENGTH
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    REF_LISTS      := 'node_ref_lists=' DIGITS NEWLINE
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    KEY_ELEMENTS   := 'key_elements=' DIGITS NEWLINE
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    LENGTH         := 'len=' DIGITS NEWLINE
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    ROW_LENGTHS    := 'row_lengths' DIGITS (COMMA DIGITS)*
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    NODES          := NODE_COMPRESSED*
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    NODE_COMPRESSED:= COMPRESSED_BYTES{4096}
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    NODE_RAW       := INTERNAL | LEAF
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    INTERNAL       := INTERNAL_FLAG POINTERS
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    LEAF           := LEAF_FLAG ROWS
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    KEY_ELEMENT    := Not-whitespace-utf8
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    KEY            := KEY_ELEMENT (NULL KEY_ELEMENT)*
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    ROWS           := ROW*
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    ROW            := KEY NULL ABSENT? NULL REFERENCES NULL VALUE NEWLINE
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    ABSENT         := 'a'
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    REFERENCES     := REFERENCE_LIST (TAB REFERENCE_LIST){node_ref_lists - 1}
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    REFERENCE_LIST := (REFERENCE (CR REFERENCE)*)?
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    REFERENCE      := KEY
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    VALUE          := no-newline-no-null-bytes
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    """
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    def __init__(self, reference_lists=0, key_elements=1, spill_at=100000):
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        """See GraphIndexBuilder.__init__.
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        :param spill_at: Optional parameter controlling the maximum number
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            of nodes that BTreeBuilder will hold in memory.
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        """
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        index.GraphIndexBuilder.__init__(self, reference_lists=reference_lists,
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            key_elements=key_elements)
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        self._spill_at = spill_at
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        self._backing_indices = []
3644.2.11 by John Arbash Meinel
Document the new form of _nodes and remove an unnecessary cast.
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        # A map of {key: (node_refs, value)}
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        self._nodes = {}
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
145
        # Indicate it hasn't been built yet
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        self._nodes_by_key = None
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
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        self._optimize_for_size = False
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def add_node(self, key, value, references=()):
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        """Add a node to the index.
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        If adding the node causes the builder to reach its spill_at threshold,
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        disk spilling will be triggered.
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        :param key: The key. keys are non-empty tuples containing
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            as many whitespace-free utf8 bytestrings as the key length
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            defined for this index.
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        :param references: An iterable of iterables of keys. Each is a
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            reference to another key.
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        :param value: The value to associate with the key. It may be any
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            bytes as long as it does not contain \0 or \n.
162
        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
163
        # Ensure that 'key' is a StaticTuple
164
        key = static_tuple.StaticTuple.from_sequence(key).intern()
3644.2.9 by John Arbash Meinel
Refactor some code.
165
        # we don't care about absent_references
166
        node_refs, _ = self._check_key_ref_value(key, references, value)
3644.2.2 by John Arbash Meinel
the new btree index doesn't have 'absent' keys in its _nodes
167
        if key in self._nodes:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
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            raise errors.BadIndexDuplicateKey(key, self)
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
169
        self._nodes[key] = static_tuple.StaticTuple(node_refs, value)
3644.2.9 by John Arbash Meinel
Refactor some code.
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        if self._nodes_by_key is not None and self._key_length > 1:
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            self._update_nodes_by_key(key, value, node_refs)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
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        if len(self._nodes) < self._spill_at:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
173
            return
3644.2.9 by John Arbash Meinel
Refactor some code.
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        self._spill_mem_keys_to_disk()
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    def _spill_mem_keys_to_disk(self):
177
        """Write the in memory keys down to disk to cap memory consumption.
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        If we already have some keys written to disk, we will combine them so
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        as to preserve the sorted order.  The algorithm for combining uses
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        powers of two.  So on the first spill, write all mem nodes into a
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        single index. On the second spill, combine the mem nodes with the nodes
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        on disk to create a 2x sized disk index and get rid of the first index.
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        On the third spill, create a single new disk index, which will contain
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        the mem nodes, and preserve the existing 2x sized index.  On the fourth,
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        combine mem with the first and second indexes, creating a new one of
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        size 4x. On the fifth create a single new one, etc.
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        """
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
189
        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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            (new_backing_file, size,
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             backing_pos) = self._spill_mem_keys_and_combine()
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        else:
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            new_backing_file, size = self._spill_mem_keys_without_combining()
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        # Note: The transport here isn't strictly needed, because we will use
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        #       direct access to the new_backing._file object
5273.1.7 by Vincent Ladeuil
No more use of the get_transport imported *symbol*, all uses are through
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        new_backing = BTreeGraphIndex(transport.get_transport('.'),
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                                      '<temp>', size)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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        # GC will clean up the file
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        new_backing._file = new_backing_file
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
200
        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
201
            if len(self._backing_indices) == backing_pos:
202
                self._backing_indices.append(None)
203
            self._backing_indices[backing_pos] = new_backing
204
            for backing_pos in range(backing_pos):
205
                self._backing_indices[backing_pos] = None
206
        else:
207
            self._backing_indices.append(new_backing)
208
        self._nodes = {}
209
        self._nodes_by_key = None
210
211
    def _spill_mem_keys_without_combining(self):
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        return self._write_nodes(self._iter_mem_nodes(), allow_optimize=False)
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    def _spill_mem_keys_and_combine(self):
4168.3.4 by John Arbash Meinel
Restore the ability to spill, but prepare a flag to disable it.
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        iterators_to_combine = [self._iter_mem_nodes()]
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        pos = -1
217
        for pos, backing in enumerate(self._backing_indices):
218
            if backing is None:
219
                pos -= 1
220
                break
221
            iterators_to_combine.append(backing.iter_all_entries())
222
        backing_pos = pos + 1
223
        new_backing_file, size = \
224
            self._write_nodes(self._iter_smallest(iterators_to_combine),
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                              allow_optimize=False)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
226
        return new_backing_file, size, backing_pos
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def add_nodes(self, nodes):
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        """Add nodes to the index.
230
231
        :param nodes: An iterable of (key, node_refs, value) entries to add.
232
        """
233
        if self.reference_lists:
234
            for (key, value, node_refs) in nodes:
235
                self.add_node(key, value, node_refs)
236
        else:
237
            for (key, value) in nodes:
238
                self.add_node(key, value)
239
240
    def _iter_mem_nodes(self):
241
        """Iterate over the nodes held in memory."""
3644.2.8 by John Arbash Meinel
Two quick tweaks.
242
        nodes = self._nodes
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
243
        if self.reference_lists:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
244
            for key in sorted(nodes):
245
                references, value = nodes[key]
246
                yield self, key, value, references
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
247
        else:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
248
            for key in sorted(nodes):
249
                references, value = nodes[key]
250
                yield self, key, value
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
251
252
    def _iter_smallest(self, iterators_to_combine):
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
253
        if len(iterators_to_combine) == 1:
254
            for value in iterators_to_combine[0]:
255
                yield value
256
            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
257
        current_values = []
258
        for iterator in iterators_to_combine:
259
            try:
260
                current_values.append(iterator.next())
261
            except StopIteration:
262
                current_values.append(None)
263
        last = None
264
        while True:
265
            # Decorate candidates with the value to allow 2.4's min to be used.
266
            candidates = [(item[1][1], item) for item
267
                in enumerate(current_values) if item[1] is not None]
268
            if not len(candidates):
269
                return
270
            selected = min(candidates)
271
            # undecorate back to (pos, node)
272
            selected = selected[1]
273
            if last == selected[1][1]:
274
                raise errors.BadIndexDuplicateKey(last, self)
275
            last = selected[1][1]
276
            # Yield, with self as the index
277
            yield (self,) + selected[1][1:]
278
            pos = selected[0]
279
            try:
280
                current_values[pos] = iterators_to_combine[pos].next()
281
            except StopIteration:
282
                current_values[pos] = None
283
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
284
    def _add_key(self, string_key, line, rows, allow_optimize=True):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
285
        """Add a key to the current chunk.
286
287
        :param string_key: The key to add.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
288
        :param line: The fully serialised key and value.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
289
        :param allow_optimize: If set to False, prevent setting the optimize
290
            flag when writing out. This is used by the _spill_mem_keys_to_disk
291
            functionality.
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
292
        """
293
        if rows[-1].writer is None:
294
            # opening a new leaf chunk;
295
            for pos, internal_row in enumerate(rows[:-1]):
296
                # flesh out any internal nodes that are needed to
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
297
                # preserve the height of the tree
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
298
                if internal_row.writer is None:
299
                    length = _PAGE_SIZE
300
                    if internal_row.nodes == 0:
301
                        length -= _RESERVED_HEADER_BYTES # padded
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
302
                    if allow_optimize:
303
                        optimize_for_size = self._optimize_for_size
304
                    else:
305
                        optimize_for_size = False
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
306
                    internal_row.writer = chunk_writer.ChunkWriter(length, 0,
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
307
                        optimize_for_size=optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
308
                    internal_row.writer.write(_INTERNAL_FLAG)
309
                    internal_row.writer.write(_INTERNAL_OFFSET +
310
                        str(rows[pos + 1].nodes) + "\n")
311
            # add a new leaf
312
            length = _PAGE_SIZE
313
            if rows[-1].nodes == 0:
314
                length -= _RESERVED_HEADER_BYTES # padded
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
315
            rows[-1].writer = chunk_writer.ChunkWriter(length,
316
                optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
317
            rows[-1].writer.write(_LEAF_FLAG)
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
318
        if rows[-1].writer.write(line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
319
            # this key did not fit in the node:
320
            rows[-1].finish_node()
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
321
            key_line = string_key + "\n"
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
322
            new_row = True
323
            for row in reversed(rows[:-1]):
324
                # Mark the start of the next node in the node above. If it
4031.3.1 by Frank Aspell
Fixing various typos
325
                # doesn't fit then propagate upwards until we find one that
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
326
                # it does fit into.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
327
                if row.writer.write(key_line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
328
                    row.finish_node()
329
                else:
330
                    # We've found a node that can handle the pointer.
331
                    new_row = False
332
                    break
333
            # If we reached the current root without being able to mark the
334
            # division point, then we need a new root:
335
            if new_row:
336
                # We need a new row
337
                if 'index' in debug.debug_flags:
338
                    trace.mutter('Inserting new global row.')
339
                new_row = _InternalBuilderRow()
340
                reserved_bytes = 0
341
                rows.insert(0, new_row)
342
                # This will be padded, hence the -100
343
                new_row.writer = chunk_writer.ChunkWriter(
344
                    _PAGE_SIZE - _RESERVED_HEADER_BYTES,
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
345
                    reserved_bytes,
346
                    optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
347
                new_row.writer.write(_INTERNAL_FLAG)
348
                new_row.writer.write(_INTERNAL_OFFSET +
349
                    str(rows[1].nodes - 1) + "\n")
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
350
                new_row.writer.write(key_line)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
351
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
352
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
353
    def _write_nodes(self, node_iterator, allow_optimize=True):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
354
        """Write node_iterator out as a B+Tree.
355
356
        :param node_iterator: An iterator of sorted nodes. Each node should
357
            match the output given by iter_all_entries.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
358
        :param allow_optimize: If set to False, prevent setting the optimize
359
            flag when writing out. This is used by the _spill_mem_keys_to_disk
360
            functionality.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
361
        :return: A file handle for a temporary file containing a B+Tree for
362
            the nodes.
363
        """
364
        # The index rows - rows[0] is the root, rows[1] is the layer under it
365
        # etc.
366
        rows = []
367
        # forward sorted by key. In future we may consider topological sorting,
368
        # at the cost of table scans for direct lookup, or a second index for
369
        # direct lookup
370
        key_count = 0
371
        # A stack with the number of nodes of each size. 0 is the root node
372
        # and must always be 1 (if there are any nodes in the tree).
373
        self.row_lengths = []
374
        # Loop over all nodes adding them to the bottom row
375
        # (rows[-1]). When we finish a chunk in a row,
4031.3.1 by Frank Aspell
Fixing various typos
376
        # propagate the key that didn't fit (comes after the chunk) to the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
377
        # row above, transitively.
378
        for node in node_iterator:
379
            if key_count == 0:
380
                # First key triggers the first row
381
                rows.append(_LeafBuilderRow())
382
            key_count += 1
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
383
            string_key, line = _btree_serializer._flatten_node(node,
384
                                    self.reference_lists)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
385
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
386
        for row in reversed(rows):
387
            pad = (type(row) != _LeafBuilderRow)
388
            row.finish_node(pad=pad)
389
        lines = [_BTSIGNATURE]
390
        lines.append(_OPTION_NODE_REFS + str(self.reference_lists) + '\n')
391
        lines.append(_OPTION_KEY_ELEMENTS + str(self._key_length) + '\n')
392
        lines.append(_OPTION_LEN + str(key_count) + '\n')
393
        row_lengths = [row.nodes for row in rows]
394
        lines.append(_OPTION_ROW_LENGTHS + ','.join(map(str, row_lengths)) + '\n')
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
395
        if row_lengths and row_lengths[-1] > 1:
396
            result = tempfile.NamedTemporaryFile(prefix='bzr-index-')
397
        else:
398
            result = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
399
        result.writelines(lines)
400
        position = sum(map(len, lines))
401
        root_row = True
402
        if position > _RESERVED_HEADER_BYTES:
403
            raise AssertionError("Could not fit the header in the"
404
                                 " reserved space: %d > %d"
405
                                 % (position, _RESERVED_HEADER_BYTES))
406
        # write the rows out:
407
        for row in rows:
408
            reserved = _RESERVED_HEADER_BYTES # reserved space for first node
409
            row.spool.flush()
410
            row.spool.seek(0)
411
            # copy nodes to the finalised file.
412
            # Special case the first node as it may be prefixed
413
            node = row.spool.read(_PAGE_SIZE)
414
            result.write(node[reserved:])
4771.3.1 by John Arbash Meinel
We don't have to pad 'short' records.
415
            if len(node) == _PAGE_SIZE:
416
                result.write("\x00" * (reserved - position))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
417
            position = 0 # Only the root row actually has an offset
418
            copied_len = osutils.pumpfile(row.spool, result)
419
            if copied_len != (row.nodes - 1) * _PAGE_SIZE:
420
                if type(row) != _LeafBuilderRow:
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
421
                    raise AssertionError("Incorrect amount of data copied"
422
                        " expected: %d, got: %d"
423
                        % ((row.nodes - 1) * _PAGE_SIZE,
424
                           copied_len))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
425
        result.flush()
426
        size = result.tell()
427
        result.seek(0)
428
        return result, size
429
430
    def finish(self):
431
        """Finalise the index.
432
433
        :return: A file handle for a temporary file containing the nodes added
434
            to the index.
435
        """
436
        return self._write_nodes(self.iter_all_entries())[0]
437
438
    def iter_all_entries(self):
439
        """Iterate over all keys within the index
440
4343.2.2 by John Arbash Meinel
Fix an important doc bug about the api of iter_all_entries()
441
        :return: An iterable of (index, key, value, reference_lists). There is
442
            no defined order for the result iteration - it will be in the most
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
443
            efficient order for the index (in this case dictionary hash order).
444
        """
445
        if 'evil' in debug.debug_flags:
446
            trace.mutter_callsite(3,
447
                "iter_all_entries scales with size of history.")
448
        # Doing serial rather than ordered would be faster; but this shouldn't
449
        # be getting called routinely anyway.
3644.2.8 by John Arbash Meinel
Two quick tweaks.
450
        iterators = [self._iter_mem_nodes()]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
451
        for backing in self._backing_indices:
452
            if backing is not None:
453
                iterators.append(backing.iter_all_entries())
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
454
        if len(iterators) == 1:
455
            return iterators[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
456
        return self._iter_smallest(iterators)
457
458
    def iter_entries(self, keys):
459
        """Iterate over keys within the index.
460
461
        :param keys: An iterable providing the keys to be retrieved.
462
        :return: An iterable of (index, key, value, reference_lists). There is no
463
            defined order for the result iteration - it will be in the most
464
            efficient order for the index (keys iteration order in this case).
465
        """
466
        keys = set(keys)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
467
        # Note: We don't use keys.intersection() here. If you read the C api,
468
        #       set.intersection(other) special cases when other is a set and
469
        #       will iterate the smaller of the two and lookup in the other.
470
        #       It does *not* do this for any other type (even dict, unlike
471
        #       some other set functions.) Since we expect keys is generally <<
472
        #       self._nodes, it is faster to iterate over it in a list
473
        #       comprehension
474
        nodes = self._nodes
475
        local_keys = [key for key in keys if key in nodes]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
476
        if self.reference_lists:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
477
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
478
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
479
                yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
480
        else:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
481
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
482
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
483
                yield self, key, node[1]
3847.2.1 by John Arbash Meinel
Shortcut BTreeBuilder.iter_entries when there are no backing indices.
484
        # Find things that are in backing indices that have not been handled
485
        # yet.
3847.2.3 by John Arbash Meinel
Bring back the shortcut
486
        if not self._backing_indices:
487
            return # We won't find anything there either
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
488
        # Remove all of the keys that we found locally
489
        keys.difference_update(local_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
490
        for backing in self._backing_indices:
491
            if backing is None:
492
                continue
493
            if not keys:
494
                return
495
            for node in backing.iter_entries(keys):
496
                keys.remove(node[1])
497
                yield (self,) + node[1:]
498
499
    def iter_entries_prefix(self, keys):
500
        """Iterate over keys within the index using prefix matching.
501
502
        Prefix matching is applied within the tuple of a key, not to within
503
        the bytestring of each key element. e.g. if you have the keys ('foo',
504
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
505
        only the former key is returned.
506
507
        :param keys: An iterable providing the key prefixes to be retrieved.
508
            Each key prefix takes the form of a tuple the length of a key, but
509
            with the last N elements 'None' rather than a regular bytestring.
510
            The first element cannot be 'None'.
511
        :return: An iterable as per iter_all_entries, but restricted to the
512
            keys with a matching prefix to those supplied. No additional keys
513
            will be returned, and every match that is in the index will be
514
            returned.
515
        """
516
        # XXX: To much duplication with the GraphIndex class; consider finding
517
        # a good place to pull out the actual common logic.
518
        keys = set(keys)
519
        if not keys:
520
            return
521
        for backing in self._backing_indices:
522
            if backing is None:
523
                continue
524
            for node in backing.iter_entries_prefix(keys):
525
                yield (self,) + node[1:]
526
        if self._key_length == 1:
527
            for key in keys:
528
                # sanity check
529
                if key[0] is None:
530
                    raise errors.BadIndexKey(key)
531
                if len(key) != self._key_length:
532
                    raise errors.BadIndexKey(key)
533
                try:
534
                    node = self._nodes[key]
535
                except KeyError:
536
                    continue
537
                if self.reference_lists:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
538
                    yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
539
                else:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
540
                    yield self, key, node[1]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
541
            return
542
        for key in keys:
543
            # sanity check
544
            if key[0] is None:
545
                raise errors.BadIndexKey(key)
546
            if len(key) != self._key_length:
547
                raise errors.BadIndexKey(key)
548
            # find what it refers to:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
549
            key_dict = self._get_nodes_by_key()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
550
            elements = list(key)
551
            # find the subdict to return
552
            try:
553
                while len(elements) and elements[0] is not None:
554
                    key_dict = key_dict[elements[0]]
555
                    elements.pop(0)
556
            except KeyError:
557
                # a non-existant lookup.
558
                continue
559
            if len(elements):
560
                dicts = [key_dict]
561
                while dicts:
562
                    key_dict = dicts.pop(-1)
563
                    # can't be empty or would not exist
564
                    item, value = key_dict.iteritems().next()
565
                    if type(value) == dict:
566
                        # push keys
567
                        dicts.extend(key_dict.itervalues())
568
                    else:
569
                        # yield keys
570
                        for value in key_dict.itervalues():
5088.1.1 by Jelmer Vernooij
Force value to a tuple before concatenating with tuple that contains variables
571
                            yield (self, ) + tuple(value)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
572
            else:
573
                yield (self, ) + key_dict
574
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
575
    def _get_nodes_by_key(self):
576
        if self._nodes_by_key is None:
577
            nodes_by_key = {}
578
            if self.reference_lists:
579
                for key, (references, value) in self._nodes.iteritems():
580
                    key_dict = nodes_by_key
581
                    for subkey in key[:-1]:
582
                        key_dict = key_dict.setdefault(subkey, {})
583
                    key_dict[key[-1]] = key, value, references
584
            else:
585
                for key, (references, value) in self._nodes.iteritems():
586
                    key_dict = nodes_by_key
587
                    for subkey in key[:-1]:
588
                        key_dict = key_dict.setdefault(subkey, {})
589
                    key_dict[key[-1]] = key, value
590
            self._nodes_by_key = nodes_by_key
591
        return self._nodes_by_key
592
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
593
    def key_count(self):
594
        """Return an estimate of the number of keys in this index.
595
596
        For InMemoryGraphIndex the estimate is exact.
597
        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
598
        return len(self._nodes) + sum(backing.key_count() for backing in
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
599
            self._backing_indices if backing is not None)
600
601
    def validate(self):
602
        """In memory index's have no known corruption at the moment."""
603
604
605
class _LeafNode(object):
606
    """A leaf node for a serialised B+Tree index."""
607
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
608
    __slots__ = ('keys', 'min_key', 'max_key')
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
609
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
610
    def __init__(self, bytes, key_length, ref_list_length):
611
        """Parse bytes to create a leaf node object."""
612
        # splitlines mangles the \r delimiters.. don't use it.
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
613
        key_list = _btree_serializer._parse_leaf_lines(bytes,
614
            key_length, ref_list_length)
615
        if key_list:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
616
            self.min_key = key_list[0][0]
617
            self.max_key = key_list[-1][0]
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
618
        else:
619
            self.min_key = self.max_key = None
620
        self.keys = dict(key_list)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
621
622
623
class _InternalNode(object):
624
    """An internal node for a serialised B+Tree index."""
625
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
626
    __slots__ = ('keys', 'offset')
627
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
628
    def __init__(self, bytes):
629
        """Parse bytes to create an internal node object."""
630
        # splitlines mangles the \r delimiters.. don't use it.
631
        self.keys = self._parse_lines(bytes.split('\n'))
632
633
    def _parse_lines(self, lines):
634
        nodes = []
635
        self.offset = int(lines[1][7:])
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
636
        as_st = static_tuple.StaticTuple.from_sequence
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
637
        for line in lines[2:]:
638
            if line == '':
639
                break
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
640
            nodes.append(as_st(map(intern, line.split('\0'))).intern())
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
641
        return nodes
642
643
644
class BTreeGraphIndex(object):
645
    """Access to nodes via the standard GraphIndex interface for B+Tree's.
646
647
    Individual nodes are held in a LRU cache. This holds the root node in
648
    memory except when very large walks are done.
649
    """
650
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
651
    def __init__(self, transport, name, size, unlimited_cache=False,
652
                 offset=0):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
653
        """Create a B+Tree index object on the index name.
654
655
        :param transport: The transport to read data for the index from.
656
        :param name: The file name of the index on transport.
657
        :param size: Optional size of the index in bytes. This allows
658
            compatibility with the GraphIndex API, as well as ensuring that
659
            the initial read (to read the root node header) can be done
660
            without over-reading even on empty indices, and on small indices
661
            allows single-IO to read the entire index.
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
662
        :param unlimited_cache: If set to True, then instead of using an
663
            LRUCache with size _NODE_CACHE_SIZE, we will use a dict and always
664
            cache all leaf nodes.
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
665
        :param offset: The start of the btree index data isn't byte 0 of the
666
            file. Instead it starts at some point later.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
667
        """
668
        self._transport = transport
669
        self._name = name
670
        self._size = size
671
        self._file = None
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
672
        self._recommended_pages = self._compute_recommended_pages()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
673
        self._root_node = None
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
674
        self._base_offset = offset
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
675
        # Default max size is 100,000 leave values
676
        self._leaf_value_cache = None # lru_cache.LRUCache(100*1000)
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
677
        if unlimited_cache:
678
            self._leaf_node_cache = {}
679
            self._internal_node_cache = {}
680
        else:
681
            self._leaf_node_cache = lru_cache.LRUCache(_NODE_CACHE_SIZE)
682
            # We use a FIFO here just to prevent possible blowout. However, a
683
            # 300k record btree has only 3k leaf nodes, and only 20 internal
684
            # nodes. A value of 100 scales to ~100*100*100 = 1M records.
685
            self._internal_node_cache = fifo_cache.FIFOCache(100)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
686
        self._key_count = None
687
        self._row_lengths = None
688
        self._row_offsets = None # Start of each row, [-1] is the end
689
690
    def __eq__(self, other):
691
        """Equal when self and other were created with the same parameters."""
692
        return (
693
            type(self) == type(other) and
694
            self._transport == other._transport and
695
            self._name == other._name and
696
            self._size == other._size)
697
698
    def __ne__(self, other):
699
        return not self.__eq__(other)
700
3763.8.12 by John Arbash Meinel
Code cleanup.
701
    def _get_and_cache_nodes(self, nodes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
702
        """Read nodes and cache them in the lru.
703
704
        The nodes list supplied is sorted and then read from disk, each node
705
        being inserted it into the _node_cache.
706
707
        Note: Asking for more nodes than the _node_cache can contain will
708
        result in some of the results being immediately discarded, to prevent
709
        this an assertion is raised if more nodes are asked for than are
710
        cachable.
711
712
        :return: A dict of {node_pos: node}
713
        """
714
        found = {}
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
715
        start_of_leaves = None
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
716
        for node_pos, node in self._read_nodes(sorted(nodes)):
717
            if node_pos == 0: # Special case
718
                self._root_node = node
719
            else:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
720
                if start_of_leaves is None:
721
                    start_of_leaves = self._row_offsets[-2]
722
                if node_pos < start_of_leaves:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
723
                    self._internal_node_cache[node_pos] = node
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
724
                else:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
725
                    self._leaf_node_cache[node_pos] = node
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
726
            found[node_pos] = node
727
        return found
728
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
729
    def _compute_recommended_pages(self):
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
730
        """Convert transport's recommended_page_size into btree pages.
731
732
        recommended_page_size is in bytes, we want to know how many _PAGE_SIZE
733
        pages fit in that length.
734
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
735
        recommended_read = self._transport.recommended_page_size()
736
        recommended_pages = int(math.ceil(recommended_read /
737
                                          float(_PAGE_SIZE)))
738
        return recommended_pages
739
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
740
    def _compute_total_pages_in_index(self):
741
        """How many pages are in the index.
742
743
        If we have read the header we will use the value stored there.
744
        Otherwise it will be computed based on the length of the index.
745
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
746
        if self._size is None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
747
            raise AssertionError('_compute_total_pages_in_index should not be'
748
                                 ' called when self._size is None')
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
749
        if self._root_node is not None:
750
            # This is the number of pages as defined by the header
751
            return self._row_offsets[-1]
752
        # This is the number of pages as defined by the size of the index. They
753
        # should be indentical.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
754
        total_pages = int(math.ceil(self._size / float(_PAGE_SIZE)))
755
        return total_pages
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
756
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
757
    def _expand_offsets(self, offsets):
758
        """Find extra pages to download.
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
759
760
        The idea is that we always want to make big-enough requests (like 64kB
761
        for http), so that we don't waste round trips. So given the entries
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
762
        that we already have cached and the new pages being downloaded figure
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
763
        out what other pages we might want to read.
764
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
765
        See also doc/developers/btree_index_prefetch.txt for more details.
766
767
        :param offsets: The offsets to be read
768
        :return: A list of offsets to download
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
769
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
770
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
771
            trace.mutter('expanding: %s\toffsets: %s', self._name, offsets)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
772
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
773
        if len(offsets) >= self._recommended_pages:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
774
            # Don't add more, we are already requesting more than enough
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
775
            if 'index' in debug.debug_flags:
776
                trace.mutter('  not expanding large request (%s >= %s)',
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
777
                             len(offsets), self._recommended_pages)
778
            return offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
779
        if self._size is None:
780
            # Don't try anything, because we don't know where the file ends
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
781
            if 'index' in debug.debug_flags:
782
                trace.mutter('  not expanding without knowing index size')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
783
            return offsets
784
        total_pages = self._compute_total_pages_in_index()
785
        cached_offsets = self._get_offsets_to_cached_pages()
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
786
        # If reading recommended_pages would read the rest of the index, just
787
        # do so.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
788
        if total_pages - len(cached_offsets) <= self._recommended_pages:
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
789
            # Read whatever is left
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
790
            if cached_offsets:
791
                expanded = [x for x in xrange(total_pages)
792
                               if x not in cached_offsets]
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
793
            else:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
794
                expanded = range(total_pages)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
795
            if 'index' in debug.debug_flags:
796
                trace.mutter('  reading all unread pages: %s', expanded)
797
            return expanded
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
798
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
799
        if self._root_node is None:
800
            # ATM on the first read of the root node of a large index, we don't
801
            # bother pre-reading any other pages. This is because the
802
            # likelyhood of actually reading interesting pages is very low.
803
            # See doc/developers/btree_index_prefetch.txt for a discussion, and
804
            # a possible implementation when we are guessing that the second
805
            # layer index is small
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
806
            final_offsets = offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
807
        else:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
808
            tree_depth = len(self._row_lengths)
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
809
            if len(cached_offsets) < tree_depth and len(offsets) == 1:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
810
                # We haven't read enough to justify expansion
811
                # If we are only going to read the root node, and 1 leaf node,
812
                # then it isn't worth expanding our request. Once we've read at
813
                # least 2 nodes, then we are probably doing a search, and we
814
                # start expanding our requests.
815
                if 'index' in debug.debug_flags:
816
                    trace.mutter('  not expanding on first reads')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
817
                return offsets
818
            final_offsets = self._expand_to_neighbors(offsets, cached_offsets,
819
                                                      total_pages)
820
821
        final_offsets = sorted(final_offsets)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
822
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
823
            trace.mutter('expanded:  %s', final_offsets)
824
        return final_offsets
825
826
    def _expand_to_neighbors(self, offsets, cached_offsets, total_pages):
827
        """Expand requests to neighbors until we have enough pages.
828
829
        This is called from _expand_offsets after policy has determined that we
830
        want to expand.
831
        We only want to expand requests within a given layer. We cheat a little
832
        bit and assume all requests will be in the same layer. This is true
833
        given the current design, but if it changes this algorithm may perform
834
        oddly.
835
836
        :param offsets: requested offsets
837
        :param cached_offsets: offsets for pages we currently have cached
838
        :return: A set() of offsets after expansion
839
        """
840
        final_offsets = set(offsets)
841
        first = end = None
842
        new_tips = set(final_offsets)
843
        while len(final_offsets) < self._recommended_pages and new_tips:
844
            next_tips = set()
845
            for pos in new_tips:
846
                if first is None:
847
                    first, end = self._find_layer_first_and_end(pos)
848
                previous = pos - 1
849
                if (previous > 0
850
                    and previous not in cached_offsets
851
                    and previous not in final_offsets
852
                    and previous >= first):
853
                    next_tips.add(previous)
854
                after = pos + 1
855
                if (after < total_pages
856
                    and after not in cached_offsets
857
                    and after not in final_offsets
858
                    and after < end):
859
                    next_tips.add(after)
860
                # This would keep us from going bigger than
861
                # recommended_pages by only expanding the first offsets.
862
                # However, if we are making a 'wide' request, it is
863
                # reasonable to expand all points equally.
864
                # if len(final_offsets) > recommended_pages:
865
                #     break
866
            final_offsets.update(next_tips)
867
            new_tips = next_tips
868
        return final_offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
869
4744.2.6 by John Arbash Meinel
Start exposing an GraphIndex.clear_cache() member.
870
    def clear_cache(self):
871
        """Clear out any cached/memoized values.
872
873
        This can be called at any time, but generally it is used when we have
874
        extracted some information, but don't expect to be requesting any more
875
        from this index.
876
        """
877
        # Note that we don't touch self._root_node or self._internal_node_cache
878
        # We don't expect either of those to be big, and it can save
879
        # round-trips in the future. We may re-evaluate this if InternalNode
880
        # memory starts to be an issue.
881
        self._leaf_node_cache.clear()
882
4011.5.3 by Andrew Bennetts
Implement and test external_references on GraphIndex and BTreeGraphIndex.
883
    def external_references(self, ref_list_num):
884
        if self._root_node is None:
885
            self._get_root_node()
886
        if ref_list_num + 1 > self.node_ref_lists:
887
            raise ValueError('No ref list %d, index has %d ref lists'
888
                % (ref_list_num, self.node_ref_lists))
889
        keys = set()
890
        refs = set()
891
        for node in self.iter_all_entries():
892
            keys.add(node[1])
893
            refs.update(node[3][ref_list_num])
894
        return refs - keys
895
3763.8.12 by John Arbash Meinel
Code cleanup.
896
    def _find_layer_first_and_end(self, offset):
897
        """Find the start/stop nodes for the layer corresponding to offset.
898
899
        :return: (first, end)
900
            first is the first node in this layer
901
            end is the first node of the next layer
902
        """
903
        first = end = 0
904
        for roffset in self._row_offsets:
905
            first = end
906
            end = roffset
907
            if offset < roffset:
908
                break
909
        return first, end
910
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
911
    def _get_offsets_to_cached_pages(self):
3763.8.12 by John Arbash Meinel
Code cleanup.
912
        """Determine what nodes we already have cached."""
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
913
        cached_offsets = set(self._internal_node_cache.keys())
914
        cached_offsets.update(self._leaf_node_cache.keys())
3763.8.12 by John Arbash Meinel
Code cleanup.
915
        if self._root_node is not None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
916
            cached_offsets.add(0)
917
        return cached_offsets
3763.8.12 by John Arbash Meinel
Code cleanup.
918
919
    def _get_root_node(self):
920
        if self._root_node is None:
921
            # We may not have a root node yet
922
            self._get_internal_nodes([0])
923
        return self._root_node
924
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
925
    def _get_nodes(self, cache, node_indexes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
926
        found = {}
927
        needed = []
928
        for idx in node_indexes:
929
            if idx == 0 and self._root_node is not None:
930
                found[0] = self._root_node
931
                continue
932
            try:
933
                found[idx] = cache[idx]
934
            except KeyError:
935
                needed.append(idx)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
936
        if not needed:
937
            return found
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
938
        needed = self._expand_offsets(needed)
3763.8.12 by John Arbash Meinel
Code cleanup.
939
        found.update(self._get_and_cache_nodes(needed))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
940
        return found
941
942
    def _get_internal_nodes(self, node_indexes):
943
        """Get a node, from cache or disk.
944
945
        After getting it, the node will be cached.
946
        """
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
947
        return self._get_nodes(self._internal_node_cache, node_indexes)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
948
3805.4.6 by John Arbash Meinel
refactor for clarity.
949
    def _cache_leaf_values(self, nodes):
950
        """Cache directly from key => value, skipping the btree."""
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
951
        if self._leaf_value_cache is not None:
3805.4.6 by John Arbash Meinel
refactor for clarity.
952
            for node in nodes.itervalues():
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
953
                for key, value in node.keys.iteritems():
954
                    if key in self._leaf_value_cache:
955
                        # Don't add the rest of the keys, we've seen this node
956
                        # before.
957
                        break
958
                    self._leaf_value_cache[key] = value
3805.4.6 by John Arbash Meinel
refactor for clarity.
959
960
    def _get_leaf_nodes(self, node_indexes):
961
        """Get a bunch of nodes, from cache or disk."""
962
        found = self._get_nodes(self._leaf_node_cache, node_indexes)
963
        self._cache_leaf_values(found)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
964
        return found
965
966
    def iter_all_entries(self):
967
        """Iterate over all keys within the index.
968
969
        :return: An iterable of (index, key, value) or (index, key, value, reference_lists).
970
            The former tuple is used when there are no reference lists in the
971
            index, making the API compatible with simple key:value index types.
972
            There is no defined order for the result iteration - it will be in
973
            the most efficient order for the index.
974
        """
975
        if 'evil' in debug.debug_flags:
976
            trace.mutter_callsite(3,
977
                "iter_all_entries scales with size of history.")
978
        if not self.key_count():
979
            return
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
980
        if self._row_offsets[-1] == 1:
981
            # There is only the root node, and we read that via key_count()
982
            if self.node_ref_lists:
983
                for key, (value, refs) in sorted(self._root_node.keys.items()):
984
                    yield (self, key, value, refs)
985
            else:
986
                for key, (value, refs) in sorted(self._root_node.keys.items()):
987
                    yield (self, key, value)
988
            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
989
        start_of_leaves = self._row_offsets[-2]
990
        end_of_leaves = self._row_offsets[-1]
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
991
        needed_offsets = range(start_of_leaves, end_of_leaves)
992
        if needed_offsets == [0]:
993
            # Special case when we only have a root node, as we have already
994
            # read everything
995
            nodes = [(0, self._root_node)]
996
        else:
997
            nodes = self._read_nodes(needed_offsets)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
998
        # We iterate strictly in-order so that we can use this function
999
        # for spilling index builds to disk.
1000
        if self.node_ref_lists:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1001
            for _, node in nodes:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1002
                for key, (value, refs) in sorted(node.keys.items()):
1003
                    yield (self, key, value, refs)
1004
        else:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1005
            for _, node in nodes:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1006
                for key, (value, refs) in sorted(node.keys.items()):
1007
                    yield (self, key, value)
1008
1009
    @staticmethod
1010
    def _multi_bisect_right(in_keys, fixed_keys):
1011
        """Find the positions where each 'in_key' would fit in fixed_keys.
1012
1013
        This is equivalent to doing "bisect_right" on each in_key into
1014
        fixed_keys
1015
1016
        :param in_keys: A sorted list of keys to match with fixed_keys
1017
        :param fixed_keys: A sorted list of keys to match against
1018
        :return: A list of (integer position, [key list]) tuples.
1019
        """
1020
        if not in_keys:
1021
            return []
1022
        if not fixed_keys:
1023
            # no pointers in the fixed_keys list, which means everything must
1024
            # fall to the left.
1025
            return [(0, in_keys)]
1026
1027
        # TODO: Iterating both lists will generally take M + N steps
1028
        #       Bisecting each key will generally take M * log2 N steps.
1029
        #       If we had an efficient way to compare, we could pick the method
1030
        #       based on which has the fewer number of steps.
1031
        #       There is also the argument that bisect_right is a compiled
1032
        #       function, so there is even more to be gained.
1033
        # iter_steps = len(in_keys) + len(fixed_keys)
1034
        # bisect_steps = len(in_keys) * math.log(len(fixed_keys), 2)
1035
        if len(in_keys) == 1: # Bisect will always be faster for M = 1
1036
            return [(bisect_right(fixed_keys, in_keys[0]), in_keys)]
1037
        # elif bisect_steps < iter_steps:
1038
        #     offsets = {}
1039
        #     for key in in_keys:
1040
        #         offsets.setdefault(bisect_right(fixed_keys, key),
1041
        #                            []).append(key)
1042
        #     return [(o, offsets[o]) for o in sorted(offsets)]
1043
        in_keys_iter = iter(in_keys)
1044
        fixed_keys_iter = enumerate(fixed_keys)
1045
        cur_in_key = in_keys_iter.next()
1046
        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1047
1048
        class InputDone(Exception): pass
1049
        class FixedDone(Exception): pass
1050
1051
        output = []
1052
        cur_out = []
1053
1054
        # TODO: Another possibility is that rather than iterating on each side,
1055
        #       we could use a combination of bisecting and iterating. For
1056
        #       example, while cur_in_key < fixed_key, bisect to find its
1057
        #       point, then iterate all matching keys, then bisect (restricted
1058
        #       to only the remainder) for the next one, etc.
1059
        try:
1060
            while True:
1061
                if cur_in_key < cur_fixed_key:
1062
                    cur_keys = []
1063
                    cur_out = (cur_fixed_offset, cur_keys)
1064
                    output.append(cur_out)
1065
                    while cur_in_key < cur_fixed_key:
1066
                        cur_keys.append(cur_in_key)
1067
                        try:
1068
                            cur_in_key = in_keys_iter.next()
1069
                        except StopIteration:
1070
                            raise InputDone
1071
                    # At this point cur_in_key must be >= cur_fixed_key
1072
                # step the cur_fixed_key until we pass the cur key, or walk off
1073
                # the end
1074
                while cur_in_key >= cur_fixed_key:
1075
                    try:
1076
                        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1077
                    except StopIteration:
1078
                        raise FixedDone
1079
        except InputDone:
1080
            # We consumed all of the input, nothing more to do
1081
            pass
1082
        except FixedDone:
1083
            # There was some input left, but we consumed all of fixed, so we
1084
            # have to add one more for the tail
1085
            cur_keys = [cur_in_key]
1086
            cur_keys.extend(in_keys_iter)
1087
            cur_out = (len(fixed_keys), cur_keys)
1088
            output.append(cur_out)
1089
        return output
1090
4593.4.5 by John Arbash Meinel
Start adding some tests.
1091
    def _walk_through_internal_nodes(self, keys):
1092
        """Take the given set of keys, and find the corresponding LeafNodes.
1093
1094
        :param keys: An unsorted iterable of keys to search for
1095
        :return: (nodes, index_and_keys)
1096
            nodes is a dict mapping {index: LeafNode}
1097
            keys_at_index is a list of tuples of [(index, [keys for Leaf])]
1098
        """
1099
        # 6 seconds spent in miss_torture using the sorted() line.
1100
        # Even with out of order disk IO it seems faster not to sort it when
1101
        # large queries are being made.
1102
        keys_at_index = [(0, sorted(keys))]
1103
1104
        for row_pos, next_row_start in enumerate(self._row_offsets[1:-1]):
1105
            node_indexes = [idx for idx, s_keys in keys_at_index]
1106
            nodes = self._get_internal_nodes(node_indexes)
1107
1108
            next_nodes_and_keys = []
1109
            for node_index, sub_keys in keys_at_index:
1110
                node = nodes[node_index]
1111
                positions = self._multi_bisect_right(sub_keys, node.keys)
1112
                node_offset = next_row_start + node.offset
1113
                next_nodes_and_keys.extend([(node_offset + pos, s_keys)
1114
                                           for pos, s_keys in positions])
1115
            keys_at_index = next_nodes_and_keys
1116
        # We should now be at the _LeafNodes
1117
        node_indexes = [idx for idx, s_keys in keys_at_index]
1118
1119
        # TODO: We may *not* want to always read all the nodes in one
1120
        #       big go. Consider setting a max size on this.
1121
        nodes = self._get_leaf_nodes(node_indexes)
1122
        return nodes, keys_at_index
1123
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1124
    def iter_entries(self, keys):
1125
        """Iterate over keys within the index.
1126
1127
        :param keys: An iterable providing the keys to be retrieved.
1128
        :return: An iterable as per iter_all_entries, but restricted to the
1129
            keys supplied. No additional keys will be returned, and every
1130
            key supplied that is in the index will be returned.
1131
        """
1132
        # 6 seconds spent in miss_torture using the sorted() line.
1133
        # Even with out of order disk IO it seems faster not to sort it when
1134
        # large queries are being made.
1135
        # However, now that we are doing multi-way bisecting, we need the keys
1136
        # in sorted order anyway. We could change the multi-way code to not
1137
        # require sorted order. (For example, it bisects for the first node,
1138
        # does an in-order search until a key comes before the current point,
1139
        # which it then bisects for, etc.)
1140
        keys = frozenset(keys)
1141
        if not keys:
1142
            return
1143
1144
        if not self.key_count():
1145
            return
1146
1147
        needed_keys = []
1148
        if self._leaf_value_cache is None:
1149
            needed_keys = keys
1150
        else:
1151
            for key in keys:
1152
                value = self._leaf_value_cache.get(key, None)
1153
                if value is not None:
1154
                    # This key is known not to be here, skip it
1155
                    value, refs = value
1156
                    if self.node_ref_lists:
1157
                        yield (self, key, value, refs)
1158
                    else:
1159
                        yield (self, key, value)
1160
                else:
1161
                    needed_keys.append(key)
1162
1163
        last_key = None
1164
        needed_keys = keys
1165
        if not needed_keys:
1166
            return
4593.4.5 by John Arbash Meinel
Start adding some tests.
1167
        nodes, nodes_and_keys = self._walk_through_internal_nodes(needed_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1168
        for node_index, sub_keys in nodes_and_keys:
1169
            if not sub_keys:
1170
                continue
1171
            node = nodes[node_index]
1172
            for next_sub_key in sub_keys:
1173
                if next_sub_key in node.keys:
1174
                    value, refs = node.keys[next_sub_key]
1175
                    if self.node_ref_lists:
1176
                        yield (self, next_sub_key, value, refs)
1177
                    else:
1178
                        yield (self, next_sub_key, value)
1179
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1180
    def _find_ancestors(self, keys, ref_list_num, parent_map, missing_keys):
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1181
        """Find the parent_map information for the set of keys.
1182
1183
        This populates the parent_map dict and missing_keys set based on the
1184
        queried keys. It also can fill out an arbitrary number of parents that
1185
        it finds while searching for the supplied keys.
1186
1187
        It is unlikely that you want to call this directly. See
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1188
        "CombinedGraphIndex.find_ancestry()" for a more appropriate API.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1189
1190
        :param keys: A keys whose ancestry we want to return
1191
            Every key will either end up in 'parent_map' or 'missing_keys'.
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1192
        :param ref_list_num: This index in the ref_lists is the parents we
1193
            care about.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1194
        :param parent_map: {key: parent_keys} for keys that are present in this
1195
            index. This may contain more entries than were in 'keys', that are
1196
            reachable ancestors of the keys requested.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1197
        :param missing_keys: keys which are known to be missing in this index.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1198
            This may include parents that were not directly requested, but we
1199
            were able to determine that they are not present in this index.
1200
        :return: search_keys    parents that were found but not queried to know
1201
            if they are missing or present. Callers can re-query this index for
1202
            those keys, and they will be placed into parent_map or missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1203
        """
1204
        if not self.key_count():
1205
            # We use key_count() to trigger reading the root node and
1206
            # determining info about this BTreeGraphIndex
1207
            # If we don't have any keys, then everything is missing
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1208
            missing_keys.update(keys)
1209
            return set()
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1210
        if ref_list_num >= self.node_ref_lists:
1211
            raise ValueError('No ref list %d, index has %d ref lists'
1212
                % (ref_list_num, self.node_ref_lists))
1213
1214
        # The main trick we are trying to accomplish is that when we find a
1215
        # key listing its parents, we expect that the parent key is also likely
1216
        # to sit on the same page. Allowing us to expand parents quickly
1217
        # without suffering the full stack of bisecting, etc.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1218
        nodes, nodes_and_keys = self._walk_through_internal_nodes(keys)
1219
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1220
        # These are parent keys which could not be immediately resolved on the
1221
        # page where the child was present. Note that we may already be
1222
        # searching for that key, and it may actually be present [or known
1223
        # missing] on one of the other pages we are reading.
1224
        # TODO:
1225
        #   We could try searching for them in the immediate previous or next
1226
        #   page. If they occur "later" we could put them in a pending lookup
1227
        #   set, and then for each node we read thereafter we could check to
1228
        #   see if they are present.
1229
        #   However, we don't know the impact of keeping this list of things
1230
        #   that I'm going to search for every node I come across from here on
1231
        #   out.
1232
        #   It doesn't handle the case when the parent key is missing on a
1233
        #   page that we *don't* read. So we already have to handle being
1234
        #   re-entrant for that.
1235
        #   Since most keys contain a date string, they are more likely to be
1236
        #   found earlier in the file than later, but we would know that right
1237
        #   away (key < min_key), and wouldn't keep searching it on every other
1238
        #   page that we read.
1239
        #   Mostly, it is an idea, one which should be benchmarked.
1240
        parents_not_on_page = set()
1241
1242
        for node_index, sub_keys in nodes_and_keys:
1243
            if not sub_keys:
1244
                continue
1245
            # sub_keys is all of the keys we are looking for that should exist
1246
            # on this page, if they aren't here, then they won't be found
1247
            node = nodes[node_index]
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1248
            node_keys = node.keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1249
            parents_to_check = set()
1250
            for next_sub_key in sub_keys:
4593.4.5 by John Arbash Meinel
Start adding some tests.
1251
                if next_sub_key not in node_keys:
1252
                    # This one is just not present in the index at all
1253
                    missing_keys.add(next_sub_key)
1254
                else:
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1255
                    value, refs = node_keys[next_sub_key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1256
                    parent_keys = refs[ref_list_num]
1257
                    parent_map[next_sub_key] = parent_keys
1258
                    parents_to_check.update(parent_keys)
1259
            # Don't look for things we've already found
1260
            parents_to_check = parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1261
            # this can be used to test the benefit of having the check loop
1262
            # inlined.
1263
            # parents_not_on_page.update(parents_to_check)
1264
            # continue
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1265
            while parents_to_check:
1266
                next_parents_to_check = set()
1267
                for key in parents_to_check:
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1268
                    if key in node_keys:
1269
                        value, refs = node_keys[key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1270
                        parent_keys = refs[ref_list_num]
1271
                        parent_map[key] = parent_keys
1272
                        next_parents_to_check.update(parent_keys)
1273
                    else:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1274
                        # This parent either is genuinely missing, or should be
1275
                        # found on another page. Perf test whether it is better
1276
                        # to check if this node should fit on this page or not.
1277
                        # in the 'everything-in-one-pack' scenario, this *not*
1278
                        # doing the check is 237ms vs 243ms.
1279
                        # So slightly better, but I assume the standard 'lots
1280
                        # of packs' is going to show a reasonable improvement
1281
                        # from the check, because it avoids 'going around
1282
                        # again' for everything that is in another index
4593.4.5 by John Arbash Meinel
Start adding some tests.
1283
                        # parents_not_on_page.add(key)
1284
                        # Missing for some reason
1285
                        if key < node.min_key:
1286
                            # in the case of bzr.dev, 3.4k/5.3k misses are
1287
                            # 'earlier' misses (65%)
1288
                            parents_not_on_page.add(key)
1289
                        elif key > node.max_key:
1290
                            # This parent key would be present on a different
1291
                            # LeafNode
1292
                            parents_not_on_page.add(key)
1293
                        else:
1294
                            # assert key != node.min_key and key != node.max_key
1295
                            # If it was going to be present, it would be on
1296
                            # *this* page, so mark it missing.
1297
                            missing_keys.add(key)
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1298
                parents_to_check = next_parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1299
                # Might want to do another .difference() from missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1300
        # parents_not_on_page could have been found on a different page, or be
1301
        # known to be missing. So cull out everything that has already been
1302
        # found.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1303
        search_keys = parents_not_on_page.difference(
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1304
            parent_map).difference(missing_keys)
4593.4.5 by John Arbash Meinel
Start adding some tests.
1305
        return search_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1306
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1307
    def iter_entries_prefix(self, keys):
1308
        """Iterate over keys within the index using prefix matching.
1309
1310
        Prefix matching is applied within the tuple of a key, not to within
1311
        the bytestring of each key element. e.g. if you have the keys ('foo',
1312
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1313
        only the former key is returned.
1314
1315
        WARNING: Note that this method currently causes a full index parse
1316
        unconditionally (which is reasonably appropriate as it is a means for
1317
        thunking many small indices into one larger one and still supplies
1318
        iter_all_entries at the thunk layer).
1319
1320
        :param keys: An iterable providing the key prefixes to be retrieved.
1321
            Each key prefix takes the form of a tuple the length of a key, but
1322
            with the last N elements 'None' rather than a regular bytestring.
1323
            The first element cannot be 'None'.
1324
        :return: An iterable as per iter_all_entries, but restricted to the
1325
            keys with a matching prefix to those supplied. No additional keys
1326
            will be returned, and every match that is in the index will be
1327
            returned.
1328
        """
1329
        keys = sorted(set(keys))
1330
        if not keys:
1331
            return
1332
        # Load if needed to check key lengths
1333
        if self._key_count is None:
1334
            self._get_root_node()
1335
        # TODO: only access nodes that can satisfy the prefixes we are looking
1336
        # for. For now, to meet API usage (as this function is not used by
1337
        # current bzrlib) just suck the entire index and iterate in memory.
1338
        nodes = {}
1339
        if self.node_ref_lists:
1340
            if self._key_length == 1:
1341
                for _1, key, value, refs in self.iter_all_entries():
1342
                    nodes[key] = value, refs
1343
            else:
1344
                nodes_by_key = {}
1345
                for _1, key, value, refs in self.iter_all_entries():
1346
                    key_value = key, value, refs
1347
                    # For a key of (foo, bar, baz) create
1348
                    # _nodes_by_key[foo][bar][baz] = key_value
1349
                    key_dict = nodes_by_key
1350
                    for subkey in key[:-1]:
1351
                        key_dict = key_dict.setdefault(subkey, {})
1352
                    key_dict[key[-1]] = key_value
1353
        else:
1354
            if self._key_length == 1:
1355
                for _1, key, value in self.iter_all_entries():
1356
                    nodes[key] = value
1357
            else:
1358
                nodes_by_key = {}
1359
                for _1, key, value in self.iter_all_entries():
1360
                    key_value = key, value
1361
                    # For a key of (foo, bar, baz) create
1362
                    # _nodes_by_key[foo][bar][baz] = key_value
1363
                    key_dict = nodes_by_key
1364
                    for subkey in key[:-1]:
1365
                        key_dict = key_dict.setdefault(subkey, {})
1366
                    key_dict[key[-1]] = key_value
1367
        if self._key_length == 1:
1368
            for key in keys:
1369
                # sanity check
1370
                if key[0] is None:
1371
                    raise errors.BadIndexKey(key)
1372
                if len(key) != self._key_length:
1373
                    raise errors.BadIndexKey(key)
1374
                try:
1375
                    if self.node_ref_lists:
1376
                        value, node_refs = nodes[key]
1377
                        yield self, key, value, node_refs
1378
                    else:
1379
                        yield self, key, nodes[key]
1380
                except KeyError:
1381
                    pass
1382
            return
1383
        for key in keys:
1384
            # sanity check
1385
            if key[0] is None:
1386
                raise errors.BadIndexKey(key)
1387
            if len(key) != self._key_length:
1388
                raise errors.BadIndexKey(key)
1389
            # find what it refers to:
1390
            key_dict = nodes_by_key
1391
            elements = list(key)
1392
            # find the subdict whose contents should be returned.
1393
            try:
1394
                while len(elements) and elements[0] is not None:
1395
                    key_dict = key_dict[elements[0]]
1396
                    elements.pop(0)
1397
            except KeyError:
1398
                # a non-existant lookup.
1399
                continue
1400
            if len(elements):
1401
                dicts = [key_dict]
1402
                while dicts:
1403
                    key_dict = dicts.pop(-1)
1404
                    # can't be empty or would not exist
1405
                    item, value = key_dict.iteritems().next()
1406
                    if type(value) == dict:
1407
                        # push keys
1408
                        dicts.extend(key_dict.itervalues())
1409
                    else:
1410
                        # yield keys
1411
                        for value in key_dict.itervalues():
1412
                            # each value is the key:value:node refs tuple
1413
                            # ready to yield.
1414
                            yield (self, ) + value
1415
            else:
1416
                # the last thing looked up was a terminal element
1417
                yield (self, ) + key_dict
1418
1419
    def key_count(self):
1420
        """Return an estimate of the number of keys in this index.
1421
1422
        For BTreeGraphIndex the estimate is exact as it is contained in the
1423
        header.
1424
        """
1425
        if self._key_count is None:
1426
            self._get_root_node()
1427
        return self._key_count
1428
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1429
    def _compute_row_offsets(self):
1430
        """Fill out the _row_offsets attribute based on _row_lengths."""
1431
        offsets = []
1432
        row_offset = 0
1433
        for row in self._row_lengths:
1434
            offsets.append(row_offset)
1435
            row_offset += row
1436
        offsets.append(row_offset)
1437
        self._row_offsets = offsets
1438
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1439
    def _parse_header_from_bytes(self, bytes):
1440
        """Parse the header from a region of bytes.
1441
1442
        :param bytes: The data to parse.
1443
        :return: An offset, data tuple such as readv yields, for the unparsed
1444
            data. (which may be of length 0).
1445
        """
1446
        signature = bytes[0:len(self._signature())]
1447
        if not signature == self._signature():
1448
            raise errors.BadIndexFormatSignature(self._name, BTreeGraphIndex)
1449
        lines = bytes[len(self._signature()):].splitlines()
1450
        options_line = lines[0]
1451
        if not options_line.startswith(_OPTION_NODE_REFS):
1452
            raise errors.BadIndexOptions(self)
1453
        try:
1454
            self.node_ref_lists = int(options_line[len(_OPTION_NODE_REFS):])
1455
        except ValueError:
1456
            raise errors.BadIndexOptions(self)
1457
        options_line = lines[1]
1458
        if not options_line.startswith(_OPTION_KEY_ELEMENTS):
1459
            raise errors.BadIndexOptions(self)
1460
        try:
1461
            self._key_length = int(options_line[len(_OPTION_KEY_ELEMENTS):])
1462
        except ValueError:
1463
            raise errors.BadIndexOptions(self)
1464
        options_line = lines[2]
1465
        if not options_line.startswith(_OPTION_LEN):
1466
            raise errors.BadIndexOptions(self)
1467
        try:
1468
            self._key_count = int(options_line[len(_OPTION_LEN):])
1469
        except ValueError:
1470
            raise errors.BadIndexOptions(self)
1471
        options_line = lines[3]
1472
        if not options_line.startswith(_OPTION_ROW_LENGTHS):
1473
            raise errors.BadIndexOptions(self)
1474
        try:
1475
            self._row_lengths = map(int, [length for length in
1476
                options_line[len(_OPTION_ROW_LENGTHS):].split(',')
1477
                if len(length)])
1478
        except ValueError:
1479
            raise errors.BadIndexOptions(self)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1480
        self._compute_row_offsets()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1481
1482
        # calculate the bytes we have processed
1483
        header_end = (len(signature) + sum(map(len, lines[0:4])) + 4)
1484
        return header_end, bytes[header_end:]
1485
1486
    def _read_nodes(self, nodes):
1487
        """Read some nodes from disk into the LRU cache.
1488
1489
        This performs a readv to get the node data into memory, and parses each
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1490
        node, then yields it to the caller. The nodes are requested in the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1491
        supplied order. If possible doing sort() on the list before requesting
1492
        a read may improve performance.
1493
1494
        :param nodes: The nodes to read. 0 - first node, 1 - second node etc.
1495
        :return: None
1496
        """
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1497
        # may be the byte string of the whole file
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1498
        bytes = None
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1499
        # list of (offset, length) regions of the file that should, evenually
1500
        # be read in to data_ranges, either from 'bytes' or from the transport
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1501
        ranges = []
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1502
        base_offset = self._base_offset
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1503
        for index in nodes:
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1504
            offset = (index * _PAGE_SIZE)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1505
            size = _PAGE_SIZE
1506
            if index == 0:
1507
                # Root node - special case
1508
                if self._size:
1509
                    size = min(_PAGE_SIZE, self._size)
1510
                else:
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1511
                    # The only case where we don't know the size, is for very
1512
                    # small indexes. So we read the whole thing
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1513
                    bytes = self._transport.get_bytes(self._name)
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1514
                    num_bytes = len(bytes)
1515
                    self._size = num_bytes - base_offset
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1516
                    # the whole thing should be parsed out of 'bytes'
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1517
                    ranges = [(start, min(_PAGE_SIZE, num_bytes - start))
1518
                        for start in xrange(base_offset, num_bytes, _PAGE_SIZE)]
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1519
                    break
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1520
            else:
3763.8.6 by John Arbash Meinel
Fix the logic a bit, and add a bit more tweaking opportunities
1521
                if offset > self._size:
1522
                    raise AssertionError('tried to read past the end'
1523
                                         ' of the file %s > %s'
1524
                                         % (offset, self._size))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1525
                size = min(size, self._size - offset)
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1526
            ranges.append((base_offset + offset, size))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1527
        if not ranges:
1528
            return
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1529
        elif bytes is not None:
1530
            # already have the whole file
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1531
            data_ranges = [(start, bytes[start:start+size])
1532
                           for start, size in ranges]
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1533
        elif self._file is None:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1534
            data_ranges = self._transport.readv(self._name, ranges)
1535
        else:
1536
            data_ranges = []
1537
            for offset, size in ranges:
1538
                self._file.seek(offset)
1539
                data_ranges.append((offset, self._file.read(size)))
1540
        for offset, data in data_ranges:
5074.4.1 by John Arbash Meinel
Add an offset flag to BTreeGraphIndex.
1541
            offset -= base_offset
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1542
            if offset == 0:
1543
                # extract the header
1544
                offset, data = self._parse_header_from_bytes(data)
1545
                if len(data) == 0:
1546
                    continue
1547
            bytes = zlib.decompress(data)
1548
            if bytes.startswith(_LEAF_FLAG):
1549
                node = _LeafNode(bytes, self._key_length, self.node_ref_lists)
1550
            elif bytes.startswith(_INTERNAL_FLAG):
1551
                node = _InternalNode(bytes)
1552
            else:
1553
                raise AssertionError("Unknown node type for %r" % bytes)
1554
            yield offset / _PAGE_SIZE, node
1555
1556
    def _signature(self):
1557
        """The file signature for this index type."""
1558
        return _BTSIGNATURE
1559
1560
    def validate(self):
1561
        """Validate that everything in the index can be accessed."""
1562
        # just read and parse every node.
1563
        self._get_root_node()
1564
        if len(self._row_lengths) > 1:
1565
            start_node = self._row_offsets[1]
1566
        else:
1567
            # We shouldn't be reading anything anyway
1568
            start_node = 1
1569
        node_end = self._row_offsets[-1]
1570
        for node in self._read_nodes(range(start_node, node_end)):
1571
            pass
1572
1573
1574
try:
4459.2.1 by Vincent Ladeuil
Use a consistent scheme for naming pyrex source files.
1575
    from bzrlib import _btree_serializer_pyx as _btree_serializer
4574.3.6 by Martin Pool
More warnings when failing to load extensions
1576
except ImportError, e:
4574.3.8 by Martin Pool
Only mutter extension load errors when they occur, and record for later
1577
    osutils.failed_to_load_extension(e)
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
1578
    from bzrlib import _btree_serializer_py as _btree_serializer