~bzr-pqm/bzr/bzr.dev

3641.3.29 by John Arbash Meinel
Cleanup the copyright headers
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# Copyright (C) 2008 Canonical Ltd
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is free software; you can redistribute it and/or modify
3641.3.29 by John Arbash Meinel
Cleanup the copyright headers
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with this program; if not, write to the Free Software
4183.7.1 by Sabin Iacob
update FSF mailing address
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# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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#
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"""B+Tree indices"""
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4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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import cStringIO
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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from bisect import bisect_right
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import math
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import tempfile
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import zlib
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from bzrlib import (
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    chunk_writer,
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    debug,
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    errors,
4208.1.2 by John Arbash Meinel
Switch to using a FIFOCache.
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    fifo_cache,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    index,
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    lru_cache,
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    osutils,
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
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    static_tuple,
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    trace,
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    )
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from bzrlib.index import _OPTION_NODE_REFS, _OPTION_KEY_ELEMENTS, _OPTION_LEN
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from bzrlib.transport import get_transport
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3641.3.3 by John Arbash Meinel
Change the header to indicate these indexes are
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_BTSIGNATURE = "B+Tree Graph Index 2\n"
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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_OPTION_ROW_LENGTHS = "row_lengths="
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_LEAF_FLAG = "type=leaf\n"
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_INTERNAL_FLAG = "type=internal\n"
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_INTERNAL_OFFSET = "offset="
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_RESERVED_HEADER_BYTES = 120
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_PAGE_SIZE = 4096
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# 4K per page: 4MB - 1000 entries
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_NODE_CACHE_SIZE = 1000
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class _BuilderRow(object):
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    """The stored state accumulated while writing out a row in the index.
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    :ivar spool: A temporary file used to accumulate nodes for this row
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        in the tree.
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    :ivar nodes: The count of nodes emitted so far.
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    """
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    def __init__(self):
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        """Create a _BuilderRow."""
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        self.nodes = 0
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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        self.spool = None# tempfile.TemporaryFile(prefix='bzr-index-row-')
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.writer = None
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    def finish_node(self, pad=True):
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        byte_lines, _, padding = self.writer.finish()
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        if self.nodes == 0:
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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            self.spool = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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            # padded note:
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            self.spool.write("\x00" * _RESERVED_HEADER_BYTES)
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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        elif self.nodes == 1:
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            # We got bigger than 1 node, switch to a temp file
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            spool = tempfile.TemporaryFile(prefix='bzr-index-row-')
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            spool.write(self.spool.getvalue())
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            self.spool = spool
3641.3.1 by John Arbash Meinel
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        skipped_bytes = 0
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        if not pad and padding:
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            del byte_lines[-1]
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            skipped_bytes = padding
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        self.spool.writelines(byte_lines)
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
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        remainder = (self.spool.tell() + skipped_bytes) % _PAGE_SIZE
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        if remainder != 0:
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            raise AssertionError("incorrect node length: %d, %d"
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                                 % (self.spool.tell(), remainder))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        self.nodes += 1
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        self.writer = None
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class _InternalBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out internal rows."""
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    def finish_node(self, pad=True):
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        if not pad:
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            raise AssertionError("Must pad internal nodes only.")
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        _BuilderRow.finish_node(self)
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class _LeafBuilderRow(_BuilderRow):
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    """The stored state accumulated while writing out a leaf rows."""
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class BTreeBuilder(index.GraphIndexBuilder):
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    """A Builder for B+Tree based Graph indices.
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    The resulting graph has the structure:
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    _SIGNATURE OPTIONS NODES
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    _SIGNATURE     := 'B+Tree Graph Index 1' NEWLINE
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    OPTIONS        := REF_LISTS KEY_ELEMENTS LENGTH
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    REF_LISTS      := 'node_ref_lists=' DIGITS NEWLINE
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    KEY_ELEMENTS   := 'key_elements=' DIGITS NEWLINE
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    LENGTH         := 'len=' DIGITS NEWLINE
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    ROW_LENGTHS    := 'row_lengths' DIGITS (COMMA DIGITS)*
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    NODES          := NODE_COMPRESSED*
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    NODE_COMPRESSED:= COMPRESSED_BYTES{4096}
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    NODE_RAW       := INTERNAL | LEAF
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    INTERNAL       := INTERNAL_FLAG POINTERS
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    LEAF           := LEAF_FLAG ROWS
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    KEY_ELEMENT    := Not-whitespace-utf8
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    KEY            := KEY_ELEMENT (NULL KEY_ELEMENT)*
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    ROWS           := ROW*
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    ROW            := KEY NULL ABSENT? NULL REFERENCES NULL VALUE NEWLINE
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    ABSENT         := 'a'
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    REFERENCES     := REFERENCE_LIST (TAB REFERENCE_LIST){node_ref_lists - 1}
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    REFERENCE_LIST := (REFERENCE (CR REFERENCE)*)?
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    REFERENCE      := KEY
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    VALUE          := no-newline-no-null-bytes
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    """
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    def __init__(self, reference_lists=0, key_elements=1, spill_at=100000):
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        """See GraphIndexBuilder.__init__.
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        :param spill_at: Optional parameter controlling the maximum number
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            of nodes that BTreeBuilder will hold in memory.
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        """
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        index.GraphIndexBuilder.__init__(self, reference_lists=reference_lists,
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            key_elements=key_elements)
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        self._spill_at = spill_at
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        self._backing_indices = []
3644.2.11 by John Arbash Meinel
Document the new form of _nodes and remove an unnecessary cast.
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        # A map of {key: (node_refs, value)}
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        self._nodes = {}
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
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        # Indicate it hasn't been built yet
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        self._nodes_by_key = None
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
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        self._optimize_for_size = False
3641.3.1 by John Arbash Meinel
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    def add_node(self, key, value, references=()):
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        """Add a node to the index.
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        If adding the node causes the builder to reach its spill_at threshold,
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        disk spilling will be triggered.
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        :param key: The key. keys are non-empty tuples containing
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            as many whitespace-free utf8 bytestrings as the key length
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            defined for this index.
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        :param references: An iterable of iterables of keys. Each is a
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            reference to another key.
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        :param value: The value to associate with the key. It may be any
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            bytes as long as it does not contain \0 or \n.
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        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
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        # Ensure that 'key' is a StaticTuple
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        key = static_tuple.StaticTuple.from_sequence(key).intern()
3644.2.9 by John Arbash Meinel
Refactor some code.
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        # we don't care about absent_references
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        node_refs, _ = self._check_key_ref_value(key, references, value)
3644.2.2 by John Arbash Meinel
the new btree index doesn't have 'absent' keys in its _nodes
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        if key in self._nodes:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
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            raise errors.BadIndexDuplicateKey(key, self)
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
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        self._nodes[key] = static_tuple.StaticTuple(node_refs, value)
3644.2.9 by John Arbash Meinel
Refactor some code.
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        if self._nodes_by_key is not None and self._key_length > 1:
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            self._update_nodes_by_key(key, value, node_refs)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
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        if len(self._nodes) < self._spill_at:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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            return
3644.2.9 by John Arbash Meinel
Refactor some code.
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        self._spill_mem_keys_to_disk()
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    def _spill_mem_keys_to_disk(self):
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        """Write the in memory keys down to disk to cap memory consumption.
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        If we already have some keys written to disk, we will combine them so
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        as to preserve the sorted order.  The algorithm for combining uses
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        powers of two.  So on the first spill, write all mem nodes into a
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        single index. On the second spill, combine the mem nodes with the nodes
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        on disk to create a 2x sized disk index and get rid of the first index.
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        On the third spill, create a single new disk index, which will contain
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        the mem nodes, and preserve the existing 2x sized index.  On the fourth,
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        combine mem with the first and second indexes, creating a new one of
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        size 4x. On the fifth create a single new one, etc.
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        """
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
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        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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            (new_backing_file, size,
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             backing_pos) = self._spill_mem_keys_and_combine()
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        else:
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            new_backing_file, size = self._spill_mem_keys_without_combining()
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        # Note: The transport here isn't strictly needed, because we will use
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        #       direct access to the new_backing._file object
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
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        new_backing = BTreeGraphIndex(get_transport('.'), '<temp>', size)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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        # GC will clean up the file
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        new_backing._file = new_backing_file
4168.3.6 by John Arbash Meinel
Add 'combine_backing_indices' as a flag for GraphIndex.set_optimize().
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        if self._combine_backing_indices:
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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            if len(self._backing_indices) == backing_pos:
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                self._backing_indices.append(None)
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            self._backing_indices[backing_pos] = new_backing
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            for backing_pos in range(backing_pos):
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                self._backing_indices[backing_pos] = None
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        else:
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            self._backing_indices.append(new_backing)
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        self._nodes = {}
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        self._nodes_by_key = None
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    def _spill_mem_keys_without_combining(self):
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        return self._write_nodes(self._iter_mem_nodes(), allow_optimize=False)
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    def _spill_mem_keys_and_combine(self):
4168.3.4 by John Arbash Meinel
Restore the ability to spill, but prepare a flag to disable it.
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        iterators_to_combine = [self._iter_mem_nodes()]
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        pos = -1
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        for pos, backing in enumerate(self._backing_indices):
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            if backing is None:
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                pos -= 1
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                break
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            iterators_to_combine.append(backing.iter_all_entries())
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        backing_pos = pos + 1
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        new_backing_file, size = \
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            self._write_nodes(self._iter_smallest(iterators_to_combine),
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                              allow_optimize=False)
4168.3.5 by John Arbash Meinel
Check that setting _combine_spilled_indices has the expected effect.
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        return new_backing_file, size, backing_pos
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def add_nodes(self, nodes):
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        """Add nodes to the index.
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        :param nodes: An iterable of (key, node_refs, value) entries to add.
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        """
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        if self.reference_lists:
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            for (key, value, node_refs) in nodes:
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                self.add_node(key, value, node_refs)
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        else:
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            for (key, value) in nodes:
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                self.add_node(key, value)
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    def _iter_mem_nodes(self):
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        """Iterate over the nodes held in memory."""
3644.2.8 by John Arbash Meinel
Two quick tweaks.
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        nodes = self._nodes
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        if self.reference_lists:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
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            for key in sorted(nodes):
244
                references, value = nodes[key]
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                yield self, key, value, references
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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        else:
3644.2.8 by John Arbash Meinel
Two quick tweaks.
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            for key in sorted(nodes):
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                references, value = nodes[key]
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                yield self, key, value
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
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    def _iter_smallest(self, iterators_to_combine):
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
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        if len(iterators_to_combine) == 1:
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            for value in iterators_to_combine[0]:
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                yield value
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            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
256
        current_values = []
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        for iterator in iterators_to_combine:
258
            try:
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                current_values.append(iterator.next())
260
            except StopIteration:
261
                current_values.append(None)
262
        last = None
263
        while True:
264
            # Decorate candidates with the value to allow 2.4's min to be used.
265
            candidates = [(item[1][1], item) for item
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                in enumerate(current_values) if item[1] is not None]
267
            if not len(candidates):
268
                return
269
            selected = min(candidates)
270
            # undecorate back to (pos, node)
271
            selected = selected[1]
272
            if last == selected[1][1]:
273
                raise errors.BadIndexDuplicateKey(last, self)
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            last = selected[1][1]
275
            # Yield, with self as the index
276
            yield (self,) + selected[1][1:]
277
            pos = selected[0]
278
            try:
279
                current_values[pos] = iterators_to_combine[pos].next()
280
            except StopIteration:
281
                current_values[pos] = None
282
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
283
    def _add_key(self, string_key, line, rows, allow_optimize=True):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
284
        """Add a key to the current chunk.
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        :param string_key: The key to add.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
287
        :param line: The fully serialised key and value.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
288
        :param allow_optimize: If set to False, prevent setting the optimize
289
            flag when writing out. This is used by the _spill_mem_keys_to_disk
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            functionality.
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
291
        """
292
        if rows[-1].writer is None:
293
            # opening a new leaf chunk;
294
            for pos, internal_row in enumerate(rows[:-1]):
295
                # flesh out any internal nodes that are needed to
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
296
                # preserve the height of the tree
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
297
                if internal_row.writer is None:
298
                    length = _PAGE_SIZE
299
                    if internal_row.nodes == 0:
300
                        length -= _RESERVED_HEADER_BYTES # padded
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
301
                    if allow_optimize:
302
                        optimize_for_size = self._optimize_for_size
303
                    else:
304
                        optimize_for_size = False
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
305
                    internal_row.writer = chunk_writer.ChunkWriter(length, 0,
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
306
                        optimize_for_size=optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
307
                    internal_row.writer.write(_INTERNAL_FLAG)
308
                    internal_row.writer.write(_INTERNAL_OFFSET +
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                        str(rows[pos + 1].nodes) + "\n")
310
            # add a new leaf
311
            length = _PAGE_SIZE
312
            if rows[-1].nodes == 0:
313
                length -= _RESERVED_HEADER_BYTES # padded
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
314
            rows[-1].writer = chunk_writer.ChunkWriter(length,
315
                optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
316
            rows[-1].writer.write(_LEAF_FLAG)
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
317
        if rows[-1].writer.write(line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
318
            # this key did not fit in the node:
319
            rows[-1].finish_node()
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
320
            key_line = string_key + "\n"
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
321
            new_row = True
322
            for row in reversed(rows[:-1]):
323
                # Mark the start of the next node in the node above. If it
4031.3.1 by Frank Aspell
Fixing various typos
324
                # doesn't fit then propagate upwards until we find one that
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
325
                # it does fit into.
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
326
                if row.writer.write(key_line):
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
327
                    row.finish_node()
328
                else:
329
                    # We've found a node that can handle the pointer.
330
                    new_row = False
331
                    break
332
            # If we reached the current root without being able to mark the
333
            # division point, then we need a new root:
334
            if new_row:
335
                # We need a new row
336
                if 'index' in debug.debug_flags:
337
                    trace.mutter('Inserting new global row.')
338
                new_row = _InternalBuilderRow()
339
                reserved_bytes = 0
340
                rows.insert(0, new_row)
341
                # This will be padded, hence the -100
342
                new_row.writer = chunk_writer.ChunkWriter(
343
                    _PAGE_SIZE - _RESERVED_HEADER_BYTES,
3777.5.2 by John Arbash Meinel
Change the name to ChunkWriter.set_optimize()
344
                    reserved_bytes,
345
                    optimize_for_size=self._optimize_for_size)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
346
                new_row.writer.write(_INTERNAL_FLAG)
347
                new_row.writer.write(_INTERNAL_OFFSET +
348
                    str(rows[1].nodes - 1) + "\n")
3641.3.11 by John Arbash Meinel
Start working on an alternate way to track compressed_chunk state.
349
                new_row.writer.write(key_line)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
350
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.8 by John Arbash Meinel
Move the add_key helper function into a separate func
351
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
352
    def _write_nodes(self, node_iterator, allow_optimize=True):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
353
        """Write node_iterator out as a B+Tree.
354
355
        :param node_iterator: An iterator of sorted nodes. Each node should
356
            match the output given by iter_all_entries.
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
357
        :param allow_optimize: If set to False, prevent setting the optimize
358
            flag when writing out. This is used by the _spill_mem_keys_to_disk
359
            functionality.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
360
        :return: A file handle for a temporary file containing a B+Tree for
361
            the nodes.
362
        """
363
        # The index rows - rows[0] is the root, rows[1] is the layer under it
364
        # etc.
365
        rows = []
366
        # forward sorted by key. In future we may consider topological sorting,
367
        # at the cost of table scans for direct lookup, or a second index for
368
        # direct lookup
369
        key_count = 0
370
        # A stack with the number of nodes of each size. 0 is the root node
371
        # and must always be 1 (if there are any nodes in the tree).
372
        self.row_lengths = []
373
        # Loop over all nodes adding them to the bottom row
374
        # (rows[-1]). When we finish a chunk in a row,
4031.3.1 by Frank Aspell
Fixing various typos
375
        # propagate the key that didn't fit (comes after the chunk) to the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
376
        # row above, transitively.
377
        for node in node_iterator:
378
            if key_count == 0:
379
                # First key triggers the first row
380
                rows.append(_LeafBuilderRow())
381
            key_count += 1
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
382
            string_key, line = _btree_serializer._flatten_node(node,
383
                                    self.reference_lists)
4168.2.1 by John Arbash Meinel
Disable optimizations when spilling content to disk.
384
            self._add_key(string_key, line, rows, allow_optimize=allow_optimize)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
385
        for row in reversed(rows):
386
            pad = (type(row) != _LeafBuilderRow)
387
            row.finish_node(pad=pad)
388
        lines = [_BTSIGNATURE]
389
        lines.append(_OPTION_NODE_REFS + str(self.reference_lists) + '\n')
390
        lines.append(_OPTION_KEY_ELEMENTS + str(self._key_length) + '\n')
391
        lines.append(_OPTION_LEN + str(key_count) + '\n')
392
        row_lengths = [row.nodes for row in rows]
393
        lines.append(_OPTION_ROW_LENGTHS + ','.join(map(str, row_lengths)) + '\n')
4708.1.1 by John Arbash Meinel
Use a cStringIO.StringIO for 1-page btree indexes.
394
        if row_lengths and row_lengths[-1] > 1:
395
            result = tempfile.NamedTemporaryFile(prefix='bzr-index-')
396
        else:
397
            result = cStringIO.StringIO()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
398
        result.writelines(lines)
399
        position = sum(map(len, lines))
400
        root_row = True
401
        if position > _RESERVED_HEADER_BYTES:
402
            raise AssertionError("Could not fit the header in the"
403
                                 " reserved space: %d > %d"
404
                                 % (position, _RESERVED_HEADER_BYTES))
405
        # write the rows out:
406
        for row in rows:
407
            reserved = _RESERVED_HEADER_BYTES # reserved space for first node
408
            row.spool.flush()
409
            row.spool.seek(0)
410
            # copy nodes to the finalised file.
411
            # Special case the first node as it may be prefixed
412
            node = row.spool.read(_PAGE_SIZE)
413
            result.write(node[reserved:])
4771.3.1 by John Arbash Meinel
We don't have to pad 'short' records.
414
            if len(node) == _PAGE_SIZE:
415
                result.write("\x00" * (reserved - position))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
416
            position = 0 # Only the root row actually has an offset
417
            copied_len = osutils.pumpfile(row.spool, result)
418
            if copied_len != (row.nodes - 1) * _PAGE_SIZE:
419
                if type(row) != _LeafBuilderRow:
3644.2.3 by John Arbash Meinel
Do a bit more work to get all the tests to pass.
420
                    raise AssertionError("Incorrect amount of data copied"
421
                        " expected: %d, got: %d"
422
                        % ((row.nodes - 1) * _PAGE_SIZE,
423
                           copied_len))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
424
        result.flush()
425
        size = result.tell()
426
        result.seek(0)
427
        return result, size
428
429
    def finish(self):
430
        """Finalise the index.
431
432
        :return: A file handle for a temporary file containing the nodes added
433
            to the index.
434
        """
435
        return self._write_nodes(self.iter_all_entries())[0]
436
437
    def iter_all_entries(self):
438
        """Iterate over all keys within the index
439
4343.2.2 by John Arbash Meinel
Fix an important doc bug about the api of iter_all_entries()
440
        :return: An iterable of (index, key, value, reference_lists). There is
441
            no defined order for the result iteration - it will be in the most
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
442
            efficient order for the index (in this case dictionary hash order).
443
        """
444
        if 'evil' in debug.debug_flags:
445
            trace.mutter_callsite(3,
446
                "iter_all_entries scales with size of history.")
447
        # Doing serial rather than ordered would be faster; but this shouldn't
448
        # be getting called routinely anyway.
3644.2.8 by John Arbash Meinel
Two quick tweaks.
449
        iterators = [self._iter_mem_nodes()]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
450
        for backing in self._backing_indices:
451
            if backing is not None:
452
                iterators.append(backing.iter_all_entries())
3641.3.9 by John Arbash Meinel
Special case around _iter_smallest when we have only
453
        if len(iterators) == 1:
454
            return iterators[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
455
        return self._iter_smallest(iterators)
456
457
    def iter_entries(self, keys):
458
        """Iterate over keys within the index.
459
460
        :param keys: An iterable providing the keys to be retrieved.
461
        :return: An iterable of (index, key, value, reference_lists). There is no
462
            defined order for the result iteration - it will be in the most
463
            efficient order for the index (keys iteration order in this case).
464
        """
465
        keys = set(keys)
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
466
        # Note: We don't use keys.intersection() here. If you read the C api,
467
        #       set.intersection(other) special cases when other is a set and
468
        #       will iterate the smaller of the two and lookup in the other.
469
        #       It does *not* do this for any other type (even dict, unlike
470
        #       some other set functions.) Since we expect keys is generally <<
471
        #       self._nodes, it is faster to iterate over it in a list
472
        #       comprehension
473
        nodes = self._nodes
474
        local_keys = [key for key in keys if key in nodes]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
475
        if self.reference_lists:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
476
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
477
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
478
                yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
479
        else:
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
480
            for key in local_keys:
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
481
                node = nodes[key]
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
482
                yield self, key, node[1]
3847.2.1 by John Arbash Meinel
Shortcut BTreeBuilder.iter_entries when there are no backing indices.
483
        # Find things that are in backing indices that have not been handled
484
        # yet.
3847.2.3 by John Arbash Meinel
Bring back the shortcut
485
        if not self._backing_indices:
486
            return # We won't find anything there either
3847.2.2 by John Arbash Meinel
Rather than skipping the difference_update entirely, just restrict it to the intersection keys.
487
        # Remove all of the keys that we found locally
488
        keys.difference_update(local_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
489
        for backing in self._backing_indices:
490
            if backing is None:
491
                continue
492
            if not keys:
493
                return
494
            for node in backing.iter_entries(keys):
495
                keys.remove(node[1])
496
                yield (self,) + node[1:]
497
498
    def iter_entries_prefix(self, keys):
499
        """Iterate over keys within the index using prefix matching.
500
501
        Prefix matching is applied within the tuple of a key, not to within
502
        the bytestring of each key element. e.g. if you have the keys ('foo',
503
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
504
        only the former key is returned.
505
506
        :param keys: An iterable providing the key prefixes to be retrieved.
507
            Each key prefix takes the form of a tuple the length of a key, but
508
            with the last N elements 'None' rather than a regular bytestring.
509
            The first element cannot be 'None'.
510
        :return: An iterable as per iter_all_entries, but restricted to the
511
            keys with a matching prefix to those supplied. No additional keys
512
            will be returned, and every match that is in the index will be
513
            returned.
514
        """
515
        # XXX: To much duplication with the GraphIndex class; consider finding
516
        # a good place to pull out the actual common logic.
517
        keys = set(keys)
518
        if not keys:
519
            return
520
        for backing in self._backing_indices:
521
            if backing is None:
522
                continue
523
            for node in backing.iter_entries_prefix(keys):
524
                yield (self,) + node[1:]
525
        if self._key_length == 1:
526
            for key in keys:
527
                # sanity check
528
                if key[0] is None:
529
                    raise errors.BadIndexKey(key)
530
                if len(key) != self._key_length:
531
                    raise errors.BadIndexKey(key)
532
                try:
533
                    node = self._nodes[key]
534
                except KeyError:
535
                    continue
536
                if self.reference_lists:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
537
                    yield self, key, node[1], node[0]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
538
                else:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
539
                    yield self, key, node[1]
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
540
            return
541
        for key in keys:
542
            # sanity check
543
            if key[0] is None:
544
                raise errors.BadIndexKey(key)
545
            if len(key) != self._key_length:
546
                raise errors.BadIndexKey(key)
547
            # find what it refers to:
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
548
            key_dict = self._get_nodes_by_key()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
549
            elements = list(key)
550
            # find the subdict to return
551
            try:
552
                while len(elements) and elements[0] is not None:
553
                    key_dict = key_dict[elements[0]]
554
                    elements.pop(0)
555
            except KeyError:
556
                # a non-existant lookup.
557
                continue
558
            if len(elements):
559
                dicts = [key_dict]
560
                while dicts:
561
                    key_dict = dicts.pop(-1)
562
                    # can't be empty or would not exist
563
                    item, value = key_dict.iteritems().next()
564
                    if type(value) == dict:
565
                        # push keys
566
                        dicts.extend(key_dict.itervalues())
567
                    else:
568
                        # yield keys
569
                        for value in key_dict.itervalues():
570
                            yield (self, ) + value
571
            else:
572
                yield (self, ) + key_dict
573
3644.2.1 by John Arbash Meinel
Change the IndexBuilders to not generate the nodes_by_key unless needed.
574
    def _get_nodes_by_key(self):
575
        if self._nodes_by_key is None:
576
            nodes_by_key = {}
577
            if self.reference_lists:
578
                for key, (references, value) in self._nodes.iteritems():
579
                    key_dict = nodes_by_key
580
                    for subkey in key[:-1]:
581
                        key_dict = key_dict.setdefault(subkey, {})
582
                    key_dict[key[-1]] = key, value, references
583
            else:
584
                for key, (references, value) in self._nodes.iteritems():
585
                    key_dict = nodes_by_key
586
                    for subkey in key[:-1]:
587
                        key_dict = key_dict.setdefault(subkey, {})
588
                    key_dict[key[-1]] = key, value
589
            self._nodes_by_key = nodes_by_key
590
        return self._nodes_by_key
591
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
592
    def key_count(self):
593
        """Return an estimate of the number of keys in this index.
594
595
        For InMemoryGraphIndex the estimate is exact.
596
        """
4789.28.2 by John Arbash Meinel
Get rid of the GraphIndexBuilder/BTreeBuilder._keys attribute.
597
        return len(self._nodes) + sum(backing.key_count() for backing in
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
598
            self._backing_indices if backing is not None)
599
600
    def validate(self):
601
        """In memory index's have no known corruption at the moment."""
602
603
604
class _LeafNode(object):
605
    """A leaf node for a serialised B+Tree index."""
606
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
607
    __slots__ = ('keys', 'min_key', 'max_key')
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
608
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
609
    def __init__(self, bytes, key_length, ref_list_length):
610
        """Parse bytes to create a leaf node object."""
611
        # splitlines mangles the \r delimiters.. don't use it.
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
612
        key_list = _btree_serializer._parse_leaf_lines(bytes,
613
            key_length, ref_list_length)
614
        if key_list:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
615
            self.min_key = key_list[0][0]
616
            self.max_key = key_list[-1][0]
4593.4.2 by John Arbash Meinel
Removing the min(keys) and max(keys) calls saves 100ms in the inner loop
617
        else:
618
            self.min_key = self.max_key = None
619
        self.keys = dict(key_list)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
620
621
622
class _InternalNode(object):
623
    """An internal node for a serialised B+Tree index."""
624
4274.1.2 by John Arbash Meinel
Add slots to _LeafNode and _InternalNode.
625
    __slots__ = ('keys', 'offset')
626
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
627
    def __init__(self, bytes):
628
        """Parse bytes to create an internal node object."""
629
        # splitlines mangles the \r delimiters.. don't use it.
630
        self.keys = self._parse_lines(bytes.split('\n'))
631
632
    def _parse_lines(self, lines):
633
        nodes = []
634
        self.offset = int(lines[1][7:])
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
635
        as_st = static_tuple.StaticTuple.from_sequence
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
636
        for line in lines[2:]:
637
            if line == '':
638
                break
4789.28.1 by John Arbash Meinel
Use StaticTuple as part of the builder process.
639
            nodes.append(as_st(map(intern, line.split('\0'))).intern())
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
640
        return nodes
641
642
643
class BTreeGraphIndex(object):
644
    """Access to nodes via the standard GraphIndex interface for B+Tree's.
645
646
    Individual nodes are held in a LRU cache. This holds the root node in
647
    memory except when very large walks are done.
648
    """
649
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
650
    def __init__(self, transport, name, size, unlimited_cache=False):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
651
        """Create a B+Tree index object on the index name.
652
653
        :param transport: The transport to read data for the index from.
654
        :param name: The file name of the index on transport.
655
        :param size: Optional size of the index in bytes. This allows
656
            compatibility with the GraphIndex API, as well as ensuring that
657
            the initial read (to read the root node header) can be done
658
            without over-reading even on empty indices, and on small indices
659
            allows single-IO to read the entire index.
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
660
        :param unlimited_cache: If set to True, then instead of using an
661
            LRUCache with size _NODE_CACHE_SIZE, we will use a dict and always
662
            cache all leaf nodes.
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
663
        """
664
        self._transport = transport
665
        self._name = name
666
        self._size = size
667
        self._file = None
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
668
        self._recommended_pages = self._compute_recommended_pages()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
669
        self._root_node = None
670
        # Default max size is 100,000 leave values
671
        self._leaf_value_cache = None # lru_cache.LRUCache(100*1000)
4634.71.1 by John Arbash Meinel
Work around bug #402623 by allowing BTreeGraphIndex(...,unlimited_cache=True).
672
        if unlimited_cache:
673
            self._leaf_node_cache = {}
674
            self._internal_node_cache = {}
675
        else:
676
            self._leaf_node_cache = lru_cache.LRUCache(_NODE_CACHE_SIZE)
677
            # We use a FIFO here just to prevent possible blowout. However, a
678
            # 300k record btree has only 3k leaf nodes, and only 20 internal
679
            # nodes. A value of 100 scales to ~100*100*100 = 1M records.
680
            self._internal_node_cache = fifo_cache.FIFOCache(100)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
681
        self._key_count = None
682
        self._row_lengths = None
683
        self._row_offsets = None # Start of each row, [-1] is the end
684
685
    def __eq__(self, other):
686
        """Equal when self and other were created with the same parameters."""
687
        return (
688
            type(self) == type(other) and
689
            self._transport == other._transport and
690
            self._name == other._name and
691
            self._size == other._size)
692
693
    def __ne__(self, other):
694
        return not self.__eq__(other)
695
3763.8.12 by John Arbash Meinel
Code cleanup.
696
    def _get_and_cache_nodes(self, nodes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
697
        """Read nodes and cache them in the lru.
698
699
        The nodes list supplied is sorted and then read from disk, each node
700
        being inserted it into the _node_cache.
701
702
        Note: Asking for more nodes than the _node_cache can contain will
703
        result in some of the results being immediately discarded, to prevent
704
        this an assertion is raised if more nodes are asked for than are
705
        cachable.
706
707
        :return: A dict of {node_pos: node}
708
        """
709
        found = {}
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
710
        start_of_leaves = None
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
711
        for node_pos, node in self._read_nodes(sorted(nodes)):
712
            if node_pos == 0: # Special case
713
                self._root_node = node
714
            else:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
715
                if start_of_leaves is None:
716
                    start_of_leaves = self._row_offsets[-2]
717
                if node_pos < start_of_leaves:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
718
                    self._internal_node_cache[node_pos] = node
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
719
                else:
4634.71.2 by John Arbash Meinel
If we are going to sometimes use a dict, we have to conform to just the dict interface.
720
                    self._leaf_node_cache[node_pos] = node
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
721
            found[node_pos] = node
722
        return found
723
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
724
    def _compute_recommended_pages(self):
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
725
        """Convert transport's recommended_page_size into btree pages.
726
727
        recommended_page_size is in bytes, we want to know how many _PAGE_SIZE
728
        pages fit in that length.
729
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
730
        recommended_read = self._transport.recommended_page_size()
731
        recommended_pages = int(math.ceil(recommended_read /
732
                                          float(_PAGE_SIZE)))
733
        return recommended_pages
734
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
735
    def _compute_total_pages_in_index(self):
736
        """How many pages are in the index.
737
738
        If we have read the header we will use the value stored there.
739
        Otherwise it will be computed based on the length of the index.
740
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
741
        if self._size is None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
742
            raise AssertionError('_compute_total_pages_in_index should not be'
743
                                 ' called when self._size is None')
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
744
        if self._root_node is not None:
745
            # This is the number of pages as defined by the header
746
            return self._row_offsets[-1]
747
        # This is the number of pages as defined by the size of the index. They
748
        # should be indentical.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
749
        total_pages = int(math.ceil(self._size / float(_PAGE_SIZE)))
750
        return total_pages
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
751
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
752
    def _expand_offsets(self, offsets):
753
        """Find extra pages to download.
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
754
755
        The idea is that we always want to make big-enough requests (like 64kB
756
        for http), so that we don't waste round trips. So given the entries
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
757
        that we already have cached and the new pages being downloaded figure
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
758
        out what other pages we might want to read.
759
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
760
        See also doc/developers/btree_index_prefetch.txt for more details.
761
762
        :param offsets: The offsets to be read
763
        :return: A list of offsets to download
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
764
        """
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
765
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
766
            trace.mutter('expanding: %s\toffsets: %s', self._name, offsets)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
767
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
768
        if len(offsets) >= self._recommended_pages:
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
769
            # Don't add more, we are already requesting more than enough
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
770
            if 'index' in debug.debug_flags:
771
                trace.mutter('  not expanding large request (%s >= %s)',
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
772
                             len(offsets), self._recommended_pages)
773
            return offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
774
        if self._size is None:
775
            # Don't try anything, because we don't know where the file ends
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
776
            if 'index' in debug.debug_flags:
777
                trace.mutter('  not expanding without knowing index size')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
778
            return offsets
779
        total_pages = self._compute_total_pages_in_index()
780
        cached_offsets = self._get_offsets_to_cached_pages()
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
781
        # If reading recommended_pages would read the rest of the index, just
782
        # do so.
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
783
        if total_pages - len(cached_offsets) <= self._recommended_pages:
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
784
            # Read whatever is left
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
785
            if cached_offsets:
786
                expanded = [x for x in xrange(total_pages)
787
                               if x not in cached_offsets]
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
788
            else:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
789
                expanded = range(total_pages)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
790
            if 'index' in debug.debug_flags:
791
                trace.mutter('  reading all unread pages: %s', expanded)
792
            return expanded
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
793
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
794
        if self._root_node is None:
795
            # ATM on the first read of the root node of a large index, we don't
796
            # bother pre-reading any other pages. This is because the
797
            # likelyhood of actually reading interesting pages is very low.
798
            # See doc/developers/btree_index_prefetch.txt for a discussion, and
799
            # a possible implementation when we are guessing that the second
800
            # layer index is small
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
801
            final_offsets = offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
802
        else:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
803
            tree_depth = len(self._row_lengths)
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
804
            if len(cached_offsets) < tree_depth and len(offsets) == 1:
3763.8.14 by John Arbash Meinel
Add in a shortcut when we haven't cached much yet.
805
                # We haven't read enough to justify expansion
806
                # If we are only going to read the root node, and 1 leaf node,
807
                # then it isn't worth expanding our request. Once we've read at
808
                # least 2 nodes, then we are probably doing a search, and we
809
                # start expanding our requests.
810
                if 'index' in debug.debug_flags:
811
                    trace.mutter('  not expanding on first reads')
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
812
                return offsets
813
            final_offsets = self._expand_to_neighbors(offsets, cached_offsets,
814
                                                      total_pages)
815
816
        final_offsets = sorted(final_offsets)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
817
        if 'index' in debug.debug_flags:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
818
            trace.mutter('expanded:  %s', final_offsets)
819
        return final_offsets
820
821
    def _expand_to_neighbors(self, offsets, cached_offsets, total_pages):
822
        """Expand requests to neighbors until we have enough pages.
823
824
        This is called from _expand_offsets after policy has determined that we
825
        want to expand.
826
        We only want to expand requests within a given layer. We cheat a little
827
        bit and assume all requests will be in the same layer. This is true
828
        given the current design, but if it changes this algorithm may perform
829
        oddly.
830
831
        :param offsets: requested offsets
832
        :param cached_offsets: offsets for pages we currently have cached
833
        :return: A set() of offsets after expansion
834
        """
835
        final_offsets = set(offsets)
836
        first = end = None
837
        new_tips = set(final_offsets)
838
        while len(final_offsets) < self._recommended_pages and new_tips:
839
            next_tips = set()
840
            for pos in new_tips:
841
                if first is None:
842
                    first, end = self._find_layer_first_and_end(pos)
843
                previous = pos - 1
844
                if (previous > 0
845
                    and previous not in cached_offsets
846
                    and previous not in final_offsets
847
                    and previous >= first):
848
                    next_tips.add(previous)
849
                after = pos + 1
850
                if (after < total_pages
851
                    and after not in cached_offsets
852
                    and after not in final_offsets
853
                    and after < end):
854
                    next_tips.add(after)
855
                # This would keep us from going bigger than
856
                # recommended_pages by only expanding the first offsets.
857
                # However, if we are making a 'wide' request, it is
858
                # reasonable to expand all points equally.
859
                # if len(final_offsets) > recommended_pages:
860
                #     break
861
            final_offsets.update(next_tips)
862
            new_tips = next_tips
863
        return final_offsets
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
864
4744.2.6 by John Arbash Meinel
Start exposing an GraphIndex.clear_cache() member.
865
    def clear_cache(self):
866
        """Clear out any cached/memoized values.
867
868
        This can be called at any time, but generally it is used when we have
869
        extracted some information, but don't expect to be requesting any more
870
        from this index.
871
        """
872
        # Note that we don't touch self._root_node or self._internal_node_cache
873
        # We don't expect either of those to be big, and it can save
874
        # round-trips in the future. We may re-evaluate this if InternalNode
875
        # memory starts to be an issue.
876
        self._leaf_node_cache.clear()
877
4011.5.3 by Andrew Bennetts
Implement and test external_references on GraphIndex and BTreeGraphIndex.
878
    def external_references(self, ref_list_num):
879
        if self._root_node is None:
880
            self._get_root_node()
881
        if ref_list_num + 1 > self.node_ref_lists:
882
            raise ValueError('No ref list %d, index has %d ref lists'
883
                % (ref_list_num, self.node_ref_lists))
884
        keys = set()
885
        refs = set()
886
        for node in self.iter_all_entries():
887
            keys.add(node[1])
888
            refs.update(node[3][ref_list_num])
889
        return refs - keys
890
3763.8.12 by John Arbash Meinel
Code cleanup.
891
    def _find_layer_first_and_end(self, offset):
892
        """Find the start/stop nodes for the layer corresponding to offset.
893
894
        :return: (first, end)
895
            first is the first node in this layer
896
            end is the first node of the next layer
897
        """
898
        first = end = 0
899
        for roffset in self._row_offsets:
900
            first = end
901
            end = roffset
902
            if offset < roffset:
903
                break
904
        return first, end
905
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
906
    def _get_offsets_to_cached_pages(self):
3763.8.12 by John Arbash Meinel
Code cleanup.
907
        """Determine what nodes we already have cached."""
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
908
        cached_offsets = set(self._internal_node_cache.keys())
909
        cached_offsets.update(self._leaf_node_cache.keys())
3763.8.12 by John Arbash Meinel
Code cleanup.
910
        if self._root_node is not None:
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
911
            cached_offsets.add(0)
912
        return cached_offsets
3763.8.12 by John Arbash Meinel
Code cleanup.
913
914
    def _get_root_node(self):
915
        if self._root_node is None:
916
            # We may not have a root node yet
917
            self._get_internal_nodes([0])
918
        return self._root_node
919
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
920
    def _get_nodes(self, cache, node_indexes):
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
921
        found = {}
922
        needed = []
923
        for idx in node_indexes:
924
            if idx == 0 and self._root_node is not None:
925
                found[0] = self._root_node
926
                continue
927
            try:
928
                found[idx] = cache[idx]
929
            except KeyError:
930
                needed.append(idx)
3763.8.1 by John Arbash Meinel
Playing around with expanding requests for btree index nodes into neighboring nodes.
931
        if not needed:
932
            return found
3763.8.15 by John Arbash Meinel
Review comments from Martin. Code clarity/variable name/docstring updates.
933
        needed = self._expand_offsets(needed)
3763.8.12 by John Arbash Meinel
Code cleanup.
934
        found.update(self._get_and_cache_nodes(needed))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
935
        return found
936
937
    def _get_internal_nodes(self, node_indexes):
938
        """Get a node, from cache or disk.
939
940
        After getting it, the node will be cached.
941
        """
3641.5.18 by John Arbash Meinel
Clean out the global state, good for prototyping and tuning, bad for production code.
942
        return self._get_nodes(self._internal_node_cache, node_indexes)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
943
3805.4.6 by John Arbash Meinel
refactor for clarity.
944
    def _cache_leaf_values(self, nodes):
945
        """Cache directly from key => value, skipping the btree."""
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
946
        if self._leaf_value_cache is not None:
3805.4.6 by John Arbash Meinel
refactor for clarity.
947
            for node in nodes.itervalues():
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
948
                for key, value in node.keys.iteritems():
949
                    if key in self._leaf_value_cache:
950
                        # Don't add the rest of the keys, we've seen this node
951
                        # before.
952
                        break
953
                    self._leaf_value_cache[key] = value
3805.4.6 by John Arbash Meinel
refactor for clarity.
954
955
    def _get_leaf_nodes(self, node_indexes):
956
        """Get a bunch of nodes, from cache or disk."""
957
        found = self._get_nodes(self._leaf_node_cache, node_indexes)
958
        self._cache_leaf_values(found)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
959
        return found
960
961
    def iter_all_entries(self):
962
        """Iterate over all keys within the index.
963
964
        :return: An iterable of (index, key, value) or (index, key, value, reference_lists).
965
            The former tuple is used when there are no reference lists in the
966
            index, making the API compatible with simple key:value index types.
967
            There is no defined order for the result iteration - it will be in
968
            the most efficient order for the index.
969
        """
970
        if 'evil' in debug.debug_flags:
971
            trace.mutter_callsite(3,
972
                "iter_all_entries scales with size of history.")
973
        if not self.key_count():
974
            return
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
975
        if self._row_offsets[-1] == 1:
976
            # There is only the root node, and we read that via key_count()
977
            if self.node_ref_lists:
978
                for key, (value, refs) in sorted(self._root_node.keys.items()):
979
                    yield (self, key, value, refs)
980
            else:
981
                for key, (value, refs) in sorted(self._root_node.keys.items()):
982
                    yield (self, key, value)
983
            return
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
984
        start_of_leaves = self._row_offsets[-2]
985
        end_of_leaves = self._row_offsets[-1]
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
986
        needed_offsets = range(start_of_leaves, end_of_leaves)
987
        if needed_offsets == [0]:
988
            # Special case when we only have a root node, as we have already
989
            # read everything
990
            nodes = [(0, self._root_node)]
991
        else:
992
            nodes = self._read_nodes(needed_offsets)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
993
        # We iterate strictly in-order so that we can use this function
994
        # for spilling index builds to disk.
995
        if self.node_ref_lists:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
996
            for _, node in nodes:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
997
                for key, (value, refs) in sorted(node.keys.items()):
998
                    yield (self, key, value, refs)
999
        else:
3824.1.2 by John Arbash Meinel
iter_all_entries() shouldn't need to re-read the page.
1000
            for _, node in nodes:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1001
                for key, (value, refs) in sorted(node.keys.items()):
1002
                    yield (self, key, value)
1003
1004
    @staticmethod
1005
    def _multi_bisect_right(in_keys, fixed_keys):
1006
        """Find the positions where each 'in_key' would fit in fixed_keys.
1007
1008
        This is equivalent to doing "bisect_right" on each in_key into
1009
        fixed_keys
1010
1011
        :param in_keys: A sorted list of keys to match with fixed_keys
1012
        :param fixed_keys: A sorted list of keys to match against
1013
        :return: A list of (integer position, [key list]) tuples.
1014
        """
1015
        if not in_keys:
1016
            return []
1017
        if not fixed_keys:
1018
            # no pointers in the fixed_keys list, which means everything must
1019
            # fall to the left.
1020
            return [(0, in_keys)]
1021
1022
        # TODO: Iterating both lists will generally take M + N steps
1023
        #       Bisecting each key will generally take M * log2 N steps.
1024
        #       If we had an efficient way to compare, we could pick the method
1025
        #       based on which has the fewer number of steps.
1026
        #       There is also the argument that bisect_right is a compiled
1027
        #       function, so there is even more to be gained.
1028
        # iter_steps = len(in_keys) + len(fixed_keys)
1029
        # bisect_steps = len(in_keys) * math.log(len(fixed_keys), 2)
1030
        if len(in_keys) == 1: # Bisect will always be faster for M = 1
1031
            return [(bisect_right(fixed_keys, in_keys[0]), in_keys)]
1032
        # elif bisect_steps < iter_steps:
1033
        #     offsets = {}
1034
        #     for key in in_keys:
1035
        #         offsets.setdefault(bisect_right(fixed_keys, key),
1036
        #                            []).append(key)
1037
        #     return [(o, offsets[o]) for o in sorted(offsets)]
1038
        in_keys_iter = iter(in_keys)
1039
        fixed_keys_iter = enumerate(fixed_keys)
1040
        cur_in_key = in_keys_iter.next()
1041
        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1042
1043
        class InputDone(Exception): pass
1044
        class FixedDone(Exception): pass
1045
1046
        output = []
1047
        cur_out = []
1048
1049
        # TODO: Another possibility is that rather than iterating on each side,
1050
        #       we could use a combination of bisecting and iterating. For
1051
        #       example, while cur_in_key < fixed_key, bisect to find its
1052
        #       point, then iterate all matching keys, then bisect (restricted
1053
        #       to only the remainder) for the next one, etc.
1054
        try:
1055
            while True:
1056
                if cur_in_key < cur_fixed_key:
1057
                    cur_keys = []
1058
                    cur_out = (cur_fixed_offset, cur_keys)
1059
                    output.append(cur_out)
1060
                    while cur_in_key < cur_fixed_key:
1061
                        cur_keys.append(cur_in_key)
1062
                        try:
1063
                            cur_in_key = in_keys_iter.next()
1064
                        except StopIteration:
1065
                            raise InputDone
1066
                    # At this point cur_in_key must be >= cur_fixed_key
1067
                # step the cur_fixed_key until we pass the cur key, or walk off
1068
                # the end
1069
                while cur_in_key >= cur_fixed_key:
1070
                    try:
1071
                        cur_fixed_offset, cur_fixed_key = fixed_keys_iter.next()
1072
                    except StopIteration:
1073
                        raise FixedDone
1074
        except InputDone:
1075
            # We consumed all of the input, nothing more to do
1076
            pass
1077
        except FixedDone:
1078
            # There was some input left, but we consumed all of fixed, so we
1079
            # have to add one more for the tail
1080
            cur_keys = [cur_in_key]
1081
            cur_keys.extend(in_keys_iter)
1082
            cur_out = (len(fixed_keys), cur_keys)
1083
            output.append(cur_out)
1084
        return output
1085
4593.4.5 by John Arbash Meinel
Start adding some tests.
1086
    def _walk_through_internal_nodes(self, keys):
1087
        """Take the given set of keys, and find the corresponding LeafNodes.
1088
1089
        :param keys: An unsorted iterable of keys to search for
1090
        :return: (nodes, index_and_keys)
1091
            nodes is a dict mapping {index: LeafNode}
1092
            keys_at_index is a list of tuples of [(index, [keys for Leaf])]
1093
        """
1094
        # 6 seconds spent in miss_torture using the sorted() line.
1095
        # Even with out of order disk IO it seems faster not to sort it when
1096
        # large queries are being made.
1097
        keys_at_index = [(0, sorted(keys))]
1098
1099
        for row_pos, next_row_start in enumerate(self._row_offsets[1:-1]):
1100
            node_indexes = [idx for idx, s_keys in keys_at_index]
1101
            nodes = self._get_internal_nodes(node_indexes)
1102
1103
            next_nodes_and_keys = []
1104
            for node_index, sub_keys in keys_at_index:
1105
                node = nodes[node_index]
1106
                positions = self._multi_bisect_right(sub_keys, node.keys)
1107
                node_offset = next_row_start + node.offset
1108
                next_nodes_and_keys.extend([(node_offset + pos, s_keys)
1109
                                           for pos, s_keys in positions])
1110
            keys_at_index = next_nodes_and_keys
1111
        # We should now be at the _LeafNodes
1112
        node_indexes = [idx for idx, s_keys in keys_at_index]
1113
1114
        # TODO: We may *not* want to always read all the nodes in one
1115
        #       big go. Consider setting a max size on this.
1116
        nodes = self._get_leaf_nodes(node_indexes)
1117
        return nodes, keys_at_index
1118
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1119
    def iter_entries(self, keys):
1120
        """Iterate over keys within the index.
1121
1122
        :param keys: An iterable providing the keys to be retrieved.
1123
        :return: An iterable as per iter_all_entries, but restricted to the
1124
            keys supplied. No additional keys will be returned, and every
1125
            key supplied that is in the index will be returned.
1126
        """
1127
        # 6 seconds spent in miss_torture using the sorted() line.
1128
        # Even with out of order disk IO it seems faster not to sort it when
1129
        # large queries are being made.
1130
        # However, now that we are doing multi-way bisecting, we need the keys
1131
        # in sorted order anyway. We could change the multi-way code to not
1132
        # require sorted order. (For example, it bisects for the first node,
1133
        # does an in-order search until a key comes before the current point,
1134
        # which it then bisects for, etc.)
1135
        keys = frozenset(keys)
1136
        if not keys:
1137
            return
1138
1139
        if not self.key_count():
1140
            return
1141
1142
        needed_keys = []
1143
        if self._leaf_value_cache is None:
1144
            needed_keys = keys
1145
        else:
1146
            for key in keys:
1147
                value = self._leaf_value_cache.get(key, None)
1148
                if value is not None:
1149
                    # This key is known not to be here, skip it
1150
                    value, refs = value
1151
                    if self.node_ref_lists:
1152
                        yield (self, key, value, refs)
1153
                    else:
1154
                        yield (self, key, value)
1155
                else:
1156
                    needed_keys.append(key)
1157
1158
        last_key = None
1159
        needed_keys = keys
1160
        if not needed_keys:
1161
            return
4593.4.5 by John Arbash Meinel
Start adding some tests.
1162
        nodes, nodes_and_keys = self._walk_through_internal_nodes(needed_keys)
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1163
        for node_index, sub_keys in nodes_and_keys:
1164
            if not sub_keys:
1165
                continue
1166
            node = nodes[node_index]
1167
            for next_sub_key in sub_keys:
1168
                if next_sub_key in node.keys:
1169
                    value, refs = node.keys[next_sub_key]
1170
                    if self.node_ref_lists:
1171
                        yield (self, next_sub_key, value, refs)
1172
                    else:
1173
                        yield (self, next_sub_key, value)
1174
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1175
    def _find_ancestors(self, keys, ref_list_num, parent_map, missing_keys):
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1176
        """Find the parent_map information for the set of keys.
1177
1178
        This populates the parent_map dict and missing_keys set based on the
1179
        queried keys. It also can fill out an arbitrary number of parents that
1180
        it finds while searching for the supplied keys.
1181
1182
        It is unlikely that you want to call this directly. See
4593.4.12 by John Arbash Meinel
Name the specific index api _find_ancestors, and the public CombinedGraphIndex api find_ancestry()
1183
        "CombinedGraphIndex.find_ancestry()" for a more appropriate API.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1184
1185
        :param keys: A keys whose ancestry we want to return
1186
            Every key will either end up in 'parent_map' or 'missing_keys'.
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1187
        :param ref_list_num: This index in the ref_lists is the parents we
1188
            care about.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1189
        :param parent_map: {key: parent_keys} for keys that are present in this
1190
            index. This may contain more entries than were in 'keys', that are
1191
            reachable ancestors of the keys requested.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1192
        :param missing_keys: keys which are known to be missing in this index.
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1193
            This may include parents that were not directly requested, but we
1194
            were able to determine that they are not present in this index.
1195
        :return: search_keys    parents that were found but not queried to know
1196
            if they are missing or present. Callers can re-query this index for
1197
            those keys, and they will be placed into parent_map or missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1198
        """
1199
        if not self.key_count():
1200
            # We use key_count() to trigger reading the root node and
1201
            # determining info about this BTreeGraphIndex
1202
            # If we don't have any keys, then everything is missing
4593.4.11 by John Arbash Meinel
Snapshot the work in progress.
1203
            missing_keys.update(keys)
1204
            return set()
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1205
        if ref_list_num >= self.node_ref_lists:
1206
            raise ValueError('No ref list %d, index has %d ref lists'
1207
                % (ref_list_num, self.node_ref_lists))
1208
1209
        # The main trick we are trying to accomplish is that when we find a
1210
        # key listing its parents, we expect that the parent key is also likely
1211
        # to sit on the same page. Allowing us to expand parents quickly
1212
        # without suffering the full stack of bisecting, etc.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1213
        nodes, nodes_and_keys = self._walk_through_internal_nodes(keys)
1214
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1215
        # These are parent keys which could not be immediately resolved on the
1216
        # page where the child was present. Note that we may already be
1217
        # searching for that key, and it may actually be present [or known
1218
        # missing] on one of the other pages we are reading.
1219
        # TODO:
1220
        #   We could try searching for them in the immediate previous or next
1221
        #   page. If they occur "later" we could put them in a pending lookup
1222
        #   set, and then for each node we read thereafter we could check to
1223
        #   see if they are present.
1224
        #   However, we don't know the impact of keeping this list of things
1225
        #   that I'm going to search for every node I come across from here on
1226
        #   out.
1227
        #   It doesn't handle the case when the parent key is missing on a
1228
        #   page that we *don't* read. So we already have to handle being
1229
        #   re-entrant for that.
1230
        #   Since most keys contain a date string, they are more likely to be
1231
        #   found earlier in the file than later, but we would know that right
1232
        #   away (key < min_key), and wouldn't keep searching it on every other
1233
        #   page that we read.
1234
        #   Mostly, it is an idea, one which should be benchmarked.
1235
        parents_not_on_page = set()
1236
1237
        for node_index, sub_keys in nodes_and_keys:
1238
            if not sub_keys:
1239
                continue
1240
            # sub_keys is all of the keys we are looking for that should exist
1241
            # on this page, if they aren't here, then they won't be found
1242
            node = nodes[node_index]
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1243
            node_keys = node.keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1244
            parents_to_check = set()
1245
            for next_sub_key in sub_keys:
4593.4.5 by John Arbash Meinel
Start adding some tests.
1246
                if next_sub_key not in node_keys:
1247
                    # This one is just not present in the index at all
1248
                    missing_keys.add(next_sub_key)
1249
                else:
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1250
                    value, refs = node_keys[next_sub_key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1251
                    parent_keys = refs[ref_list_num]
1252
                    parent_map[next_sub_key] = parent_keys
1253
                    parents_to_check.update(parent_keys)
1254
            # Don't look for things we've already found
1255
            parents_to_check = parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1256
            # this can be used to test the benefit of having the check loop
1257
            # inlined.
1258
            # parents_not_on_page.update(parents_to_check)
1259
            # continue
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1260
            while parents_to_check:
1261
                next_parents_to_check = set()
1262
                for key in parents_to_check:
4593.4.3 by John Arbash Meinel
Some minor attribute lookup cleanus, doesn't make a big difference.
1263
                    if key in node_keys:
1264
                        value, refs = node_keys[key]
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1265
                        parent_keys = refs[ref_list_num]
1266
                        parent_map[key] = parent_keys
1267
                        next_parents_to_check.update(parent_keys)
1268
                    else:
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1269
                        # This parent either is genuinely missing, or should be
1270
                        # found on another page. Perf test whether it is better
1271
                        # to check if this node should fit on this page or not.
1272
                        # in the 'everything-in-one-pack' scenario, this *not*
1273
                        # doing the check is 237ms vs 243ms.
1274
                        # So slightly better, but I assume the standard 'lots
1275
                        # of packs' is going to show a reasonable improvement
1276
                        # from the check, because it avoids 'going around
1277
                        # again' for everything that is in another index
4593.4.5 by John Arbash Meinel
Start adding some tests.
1278
                        # parents_not_on_page.add(key)
1279
                        # Missing for some reason
1280
                        if key < node.min_key:
1281
                            # in the case of bzr.dev, 3.4k/5.3k misses are
1282
                            # 'earlier' misses (65%)
1283
                            parents_not_on_page.add(key)
1284
                        elif key > node.max_key:
1285
                            # This parent key would be present on a different
1286
                            # LeafNode
1287
                            parents_not_on_page.add(key)
1288
                        else:
1289
                            # assert key != node.min_key and key != node.max_key
1290
                            # If it was going to be present, it would be on
1291
                            # *this* page, so mark it missing.
1292
                            missing_keys.add(key)
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1293
                parents_to_check = next_parents_to_check.difference(parent_map)
4593.4.4 by John Arbash Meinel
Trying out a few more tweaks.
1294
                # Might want to do another .difference() from missing_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1295
        # parents_not_on_page could have been found on a different page, or be
1296
        # known to be missing. So cull out everything that has already been
1297
        # found.
4593.4.5 by John Arbash Meinel
Start adding some tests.
1298
        search_keys = parents_not_on_page.difference(
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1299
            parent_map).difference(missing_keys)
4593.4.5 by John Arbash Meinel
Start adding some tests.
1300
        return search_keys
4593.4.1 by John Arbash Meinel
Implement a function on btree that inlines the get_parent_map loop.
1301
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1302
    def iter_entries_prefix(self, keys):
1303
        """Iterate over keys within the index using prefix matching.
1304
1305
        Prefix matching is applied within the tuple of a key, not to within
1306
        the bytestring of each key element. e.g. if you have the keys ('foo',
1307
        'bar'), ('foobar', 'gam') and do a prefix search for ('foo', None) then
1308
        only the former key is returned.
1309
1310
        WARNING: Note that this method currently causes a full index parse
1311
        unconditionally (which is reasonably appropriate as it is a means for
1312
        thunking many small indices into one larger one and still supplies
1313
        iter_all_entries at the thunk layer).
1314
1315
        :param keys: An iterable providing the key prefixes to be retrieved.
1316
            Each key prefix takes the form of a tuple the length of a key, but
1317
            with the last N elements 'None' rather than a regular bytestring.
1318
            The first element cannot be 'None'.
1319
        :return: An iterable as per iter_all_entries, but restricted to the
1320
            keys with a matching prefix to those supplied. No additional keys
1321
            will be returned, and every match that is in the index will be
1322
            returned.
1323
        """
1324
        keys = sorted(set(keys))
1325
        if not keys:
1326
            return
1327
        # Load if needed to check key lengths
1328
        if self._key_count is None:
1329
            self._get_root_node()
1330
        # TODO: only access nodes that can satisfy the prefixes we are looking
1331
        # for. For now, to meet API usage (as this function is not used by
1332
        # current bzrlib) just suck the entire index and iterate in memory.
1333
        nodes = {}
1334
        if self.node_ref_lists:
1335
            if self._key_length == 1:
1336
                for _1, key, value, refs in self.iter_all_entries():
1337
                    nodes[key] = value, refs
1338
            else:
1339
                nodes_by_key = {}
1340
                for _1, key, value, refs in self.iter_all_entries():
1341
                    key_value = key, value, refs
1342
                    # For a key of (foo, bar, baz) create
1343
                    # _nodes_by_key[foo][bar][baz] = key_value
1344
                    key_dict = nodes_by_key
1345
                    for subkey in key[:-1]:
1346
                        key_dict = key_dict.setdefault(subkey, {})
1347
                    key_dict[key[-1]] = key_value
1348
        else:
1349
            if self._key_length == 1:
1350
                for _1, key, value in self.iter_all_entries():
1351
                    nodes[key] = value
1352
            else:
1353
                nodes_by_key = {}
1354
                for _1, key, value in self.iter_all_entries():
1355
                    key_value = key, value
1356
                    # For a key of (foo, bar, baz) create
1357
                    # _nodes_by_key[foo][bar][baz] = key_value
1358
                    key_dict = nodes_by_key
1359
                    for subkey in key[:-1]:
1360
                        key_dict = key_dict.setdefault(subkey, {})
1361
                    key_dict[key[-1]] = key_value
1362
        if self._key_length == 1:
1363
            for key in keys:
1364
                # sanity check
1365
                if key[0] is None:
1366
                    raise errors.BadIndexKey(key)
1367
                if len(key) != self._key_length:
1368
                    raise errors.BadIndexKey(key)
1369
                try:
1370
                    if self.node_ref_lists:
1371
                        value, node_refs = nodes[key]
1372
                        yield self, key, value, node_refs
1373
                    else:
1374
                        yield self, key, nodes[key]
1375
                except KeyError:
1376
                    pass
1377
            return
1378
        for key in keys:
1379
            # sanity check
1380
            if key[0] is None:
1381
                raise errors.BadIndexKey(key)
1382
            if len(key) != self._key_length:
1383
                raise errors.BadIndexKey(key)
1384
            # find what it refers to:
1385
            key_dict = nodes_by_key
1386
            elements = list(key)
1387
            # find the subdict whose contents should be returned.
1388
            try:
1389
                while len(elements) and elements[0] is not None:
1390
                    key_dict = key_dict[elements[0]]
1391
                    elements.pop(0)
1392
            except KeyError:
1393
                # a non-existant lookup.
1394
                continue
1395
            if len(elements):
1396
                dicts = [key_dict]
1397
                while dicts:
1398
                    key_dict = dicts.pop(-1)
1399
                    # can't be empty or would not exist
1400
                    item, value = key_dict.iteritems().next()
1401
                    if type(value) == dict:
1402
                        # push keys
1403
                        dicts.extend(key_dict.itervalues())
1404
                    else:
1405
                        # yield keys
1406
                        for value in key_dict.itervalues():
1407
                            # each value is the key:value:node refs tuple
1408
                            # ready to yield.
1409
                            yield (self, ) + value
1410
            else:
1411
                # the last thing looked up was a terminal element
1412
                yield (self, ) + key_dict
1413
1414
    def key_count(self):
1415
        """Return an estimate of the number of keys in this index.
1416
1417
        For BTreeGraphIndex the estimate is exact as it is contained in the
1418
        header.
1419
        """
1420
        if self._key_count is None:
1421
            self._get_root_node()
1422
        return self._key_count
1423
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1424
    def _compute_row_offsets(self):
1425
        """Fill out the _row_offsets attribute based on _row_lengths."""
1426
        offsets = []
1427
        row_offset = 0
1428
        for row in self._row_lengths:
1429
            offsets.append(row_offset)
1430
            row_offset += row
1431
        offsets.append(row_offset)
1432
        self._row_offsets = offsets
1433
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1434
    def _parse_header_from_bytes(self, bytes):
1435
        """Parse the header from a region of bytes.
1436
1437
        :param bytes: The data to parse.
1438
        :return: An offset, data tuple such as readv yields, for the unparsed
1439
            data. (which may be of length 0).
1440
        """
1441
        signature = bytes[0:len(self._signature())]
1442
        if not signature == self._signature():
1443
            raise errors.BadIndexFormatSignature(self._name, BTreeGraphIndex)
1444
        lines = bytes[len(self._signature()):].splitlines()
1445
        options_line = lines[0]
1446
        if not options_line.startswith(_OPTION_NODE_REFS):
1447
            raise errors.BadIndexOptions(self)
1448
        try:
1449
            self.node_ref_lists = int(options_line[len(_OPTION_NODE_REFS):])
1450
        except ValueError:
1451
            raise errors.BadIndexOptions(self)
1452
        options_line = lines[1]
1453
        if not options_line.startswith(_OPTION_KEY_ELEMENTS):
1454
            raise errors.BadIndexOptions(self)
1455
        try:
1456
            self._key_length = int(options_line[len(_OPTION_KEY_ELEMENTS):])
1457
        except ValueError:
1458
            raise errors.BadIndexOptions(self)
1459
        options_line = lines[2]
1460
        if not options_line.startswith(_OPTION_LEN):
1461
            raise errors.BadIndexOptions(self)
1462
        try:
1463
            self._key_count = int(options_line[len(_OPTION_LEN):])
1464
        except ValueError:
1465
            raise errors.BadIndexOptions(self)
1466
        options_line = lines[3]
1467
        if not options_line.startswith(_OPTION_ROW_LENGTHS):
1468
            raise errors.BadIndexOptions(self)
1469
        try:
1470
            self._row_lengths = map(int, [length for length in
1471
                options_line[len(_OPTION_ROW_LENGTHS):].split(',')
1472
                if len(length)])
1473
        except ValueError:
1474
            raise errors.BadIndexOptions(self)
3763.8.7 by John Arbash Meinel
A bit of doc updates, start putting in tests for current behavior.
1475
        self._compute_row_offsets()
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1476
1477
        # calculate the bytes we have processed
1478
        header_end = (len(signature) + sum(map(len, lines[0:4])) + 4)
1479
        return header_end, bytes[header_end:]
1480
1481
    def _read_nodes(self, nodes):
1482
        """Read some nodes from disk into the LRU cache.
1483
1484
        This performs a readv to get the node data into memory, and parses each
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1485
        node, then yields it to the caller. The nodes are requested in the
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1486
        supplied order. If possible doing sort() on the list before requesting
1487
        a read may improve performance.
1488
1489
        :param nodes: The nodes to read. 0 - first node, 1 - second node etc.
1490
        :return: None
1491
        """
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1492
        # may be the byte string of the whole file
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1493
        bytes = None
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1494
        # list of (offset, length) regions of the file that should, evenually
1495
        # be read in to data_ranges, either from 'bytes' or from the transport
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1496
        ranges = []
1497
        for index in nodes:
1498
            offset = index * _PAGE_SIZE
1499
            size = _PAGE_SIZE
1500
            if index == 0:
1501
                # Root node - special case
1502
                if self._size:
1503
                    size = min(_PAGE_SIZE, self._size)
1504
                else:
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1505
                    # The only case where we don't know the size, is for very
1506
                    # small indexes. So we read the whole thing
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1507
                    bytes = self._transport.get_bytes(self._name)
1508
                    self._size = len(bytes)
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1509
                    # the whole thing should be parsed out of 'bytes'
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1510
                    ranges.append((0, len(bytes)))
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1511
                    break
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1512
            else:
3763.8.6 by John Arbash Meinel
Fix the logic a bit, and add a bit more tweaking opportunities
1513
                if offset > self._size:
1514
                    raise AssertionError('tried to read past the end'
1515
                                         ' of the file %s > %s'
1516
                                         % (offset, self._size))
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1517
                size = min(size, self._size - offset)
1518
            ranges.append((offset, size))
1519
        if not ranges:
1520
            return
3868.1.1 by Martin Pool
merge John's patch to avoid re-reading pack-names file
1521
        elif bytes is not None:
1522
            # already have the whole file
3823.5.2 by John Arbash Meinel
It turns out that we read the pack-names file 3-times because
1523
            data_ranges = [(start, bytes[start:start+_PAGE_SIZE])
1524
                           for start in xrange(0, len(bytes), _PAGE_SIZE)]
3824.1.1 by John Arbash Meinel
Fix _read_nodes() to only issue a single read if there is no known size.
1525
        elif self._file is None:
3641.3.1 by John Arbash Meinel
Bring in the btree_index and chunk_writer code and their tests.
1526
            data_ranges = self._transport.readv(self._name, ranges)
1527
        else:
1528
            data_ranges = []
1529
            for offset, size in ranges:
1530
                self._file.seek(offset)
1531
                data_ranges.append((offset, self._file.read(size)))
1532
        for offset, data in data_ranges:
1533
            if offset == 0:
1534
                # extract the header
1535
                offset, data = self._parse_header_from_bytes(data)
1536
                if len(data) == 0:
1537
                    continue
1538
            bytes = zlib.decompress(data)
1539
            if bytes.startswith(_LEAF_FLAG):
1540
                node = _LeafNode(bytes, self._key_length, self.node_ref_lists)
1541
            elif bytes.startswith(_INTERNAL_FLAG):
1542
                node = _InternalNode(bytes)
1543
            else:
1544
                raise AssertionError("Unknown node type for %r" % bytes)
1545
            yield offset / _PAGE_SIZE, node
1546
1547
    def _signature(self):
1548
        """The file signature for this index type."""
1549
        return _BTSIGNATURE
1550
1551
    def validate(self):
1552
        """Validate that everything in the index can be accessed."""
1553
        # just read and parse every node.
1554
        self._get_root_node()
1555
        if len(self._row_lengths) > 1:
1556
            start_node = self._row_offsets[1]
1557
        else:
1558
            # We shouldn't be reading anything anyway
1559
            start_node = 1
1560
        node_end = self._row_offsets[-1]
1561
        for node in self._read_nodes(range(start_node, node_end)):
1562
            pass
1563
1564
1565
try:
4459.2.1 by Vincent Ladeuil
Use a consistent scheme for naming pyrex source files.
1566
    from bzrlib import _btree_serializer_pyx as _btree_serializer
4574.3.6 by Martin Pool
More warnings when failing to load extensions
1567
except ImportError, e:
4574.3.8 by Martin Pool
Only mutter extension load errors when they occur, and record for later
1568
    osutils.failed_to_load_extension(e)
3641.3.30 by John Arbash Meinel
Rename _parse_btree to _btree_serializer
1569
    from bzrlib import _btree_serializer_py as _btree_serializer